Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00465 ATGGAAGCCGCAGTTATCGACGCCGGTTCCAGCCTCCTCAAAGCCGGTTTTGCAATTCCCGATCAAACTCCAGCCATGATAATTCCTAGTCAGATGAAACGAATGGTTGATGATAAGGGATCAGCGGATGATAATGGTAACGGTCAGTTAGTGGTGGATGATATTGCTGTTGAACCGGTGGTTCGAGGTTATGTTAGAGATTGGGATGCTATGGAGGATttgttgaattatgttttgtaTTCTGGTCTTGGATGGGAAATTGGTAATGAAGGACAAATACTGTTTACGGATCCACTTTGTACCCCAAAGGCTAACAAAGAACAGCTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCATCCGAACAGGCAGTGCTGTCGCTCTATGCTGTGGGAAGGATATCTGGATGCACAGTTGATATTGGTCATGGAAAAATAGATATTGCTCCAGTAATTGAGGGTGCTGTTAACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTACTGATCTAACTAATTTCCTAGCTCAAGAACTTGGCAAATCCAATCCGCTAGTGAATATCAGCTTGTCGGATGTTGAGAAAATTAAACAGCAATACTCATGTTGTGCTGAAGATGACTTAGCTTATCAGAAGACCGAAGATTCTTGTCCTGTGGAGACACATACCCTTCCTGATGGACAGGTGATAACAATCGGAAGAGAAAGATATACAGTTGGTGAAGCTTTATTCCAGCCAAGTCTATTGGGTTTAGAGGCTCACGGCATTGTAGAGCAGCTTGTCCGTACTATTTCAACTGTGACATCTGATAATCACCGGCAACTTCTGGAAAATACTGTGGTTTGTGGTGGCACTTCTTCTATGACTGGATTTGAAGAGAGATTTCAGAAGGAATCTTTGCTATGTTCATCTGCTGTTCGACCTACCTTGGTTAAGCCTCCAGAATATATGCCGGAAAATTTAACTACATATTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTTCCTCAAAATCAGCATGTAACTAAGGCAGACTATGATGAAAACGGGCCTTCCATTGTTCATCGGAAATGCTTCTGA 1101 0.4196 MEAAVIDAGSSLLKAGFAIPDQTPAMIIPSQMKRMVDDKGSADDNGNGQLVVDDIAVEPVVRGYVRDWDAMEDLLNYVLYSGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGTDLTNFLAQELGKSNPLVNISLSDVEKIKQQYSCCAEDDLAYQKTEDSCPVETHTLPDGQVITIGRERYTVGEALFQPSLLGLEAHGIVEQLVRTISTVTSDNHRQLLENTVVCGGTSSMTGFEERFQKESLLCSSAVRPTLVKPPEYMPENLTTYSAWVGGAILAKVVFPQNQHVTKADYDENGPSIVHRKCF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00465 366 PANTHER BNACNNG31150D PROTEIN 1 365 - -
Tsu03g00465 366 Gene3D Actin; Chain A, domain 4 170 257 - -
Tsu03g00465 366 PRINTS Actin signature 105 118 IPR004000 -
Tsu03g00465 366 PRINTS Actin signature 130 149 IPR004000 -
Tsu03g00465 366 PRINTS Actin signature 222 238 IPR004000 -
Tsu03g00465 366 PRINTS Actin signature 23 32 IPR004000 -
Tsu03g00465 366 SMART actin_3 1 366 IPR004000 -
Tsu03g00465 366 Gene3D - 128 329 - -
Tsu03g00465 366 PANTHER ACTIN 1 365 IPR004000 -
Tsu03g00465 366 Pfam Actin 2 366 IPR004000 -
Tsu03g00465 366 SUPERFAMILY Actin-like ATPase domain 2 143 IPR043129 -
Tsu03g00465 366 CDD NBD_sugar-kinase_HSP70_actin 4 171 - -
Tsu03g00465 366 Gene3D - 5 360 - -
Tsu03g00465 366 SUPERFAMILY Actin-like ATPase domain 136 366 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00465 Tsu-Chr3 3941874 3948505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00465 1 366 Cytoskeleton Gene Families AT1G49240 36.842 2.66e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00465 K16615 - gmx:100794153 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00465 03 3941874 3948505 Tsu03g00465 03 3941874 3948505 ECH