Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00454 ATGGCTGCAACTATGATAGGAGGCGCTTTTCTCTCTGCAACTGTTCAGACTTTAGTTGAGAAACTTGCTTCAACAGAGTTTCTTGATTACATCACAAACACCAAGCTCAATGTCTCACTCTTGAGGCAGTTAAAAACAACACTACTCACTCTTCAGGTTGTGCTGGATGATGCAGAGGAGAAGCAGATCAACAATCCTGCTGTCAAACAATGGCTTGATGATTTGAAAGATGCTGTCTTCGATGCCGAGGATTTGCTCAACCAAATCAGCTATGATTCCCTGCGATGCAAGGTGGAGAACATGCAAGCTGTAAACAAAACTAATCAGGTGTGGAACATCCTTTCATCTCCTTTTAAAAACTTGTACGGAGAGATCAATTCTCAGATGAAGATCATGTGTGAAACCCTGCAACTTTTTGCACAACATAAAGATATACTTggtttgaaaactaaaagtgctAGAGTTTCTCGCCGAACACCTTCAAGTTCAGTGGTAAATGAATCTGTCATGGTGGGTAGGAAGGATGAAAAAGAGACAATAATGAACATGTTGCTATCACAGAGGGACACAACCAGTAATAATATAGGTGTTGTTGCAATTTTGGGAATGGGAGGTTTAGGAAAAACTACCCTTGCCCAACTTCTTTACAACGATAAAGAAGTTCAACAATATTTTGATATGAAGGCCTGGGTTTGTGTGTCTGAGGATTTTGATACAATGAGAGTAACCAAGTCTCTCCTTGAATCTGTCACTTCCAGAACTTGGGATAGCACTAATCTTGATTTACTTCGAGTTGAATTAAAGAAAAACTCGAGGGacaaaagatttttgtttgtgttggaTGATCTGTGGAATGATAATTACAGTGATTGGGATGAGCTAGTAAGTCCCTTCATTGATGGAAAACCTGGAAGCAGGGTGATTGTAACAACGCGTCAACAAAAAGTTGCAGAGGTGGTACACACATTTCCTATTCAAAAATTAGAACCACTATCAAATGAAGAATGCTGGTCTTTACTCTCAAAGCATGCATTGGGAAGTGATGAGTTTCACGATAGTAAAAACACAACCCTTGAAGAAATTGGCAGGAAGATTGCGAAAAAGTGTGGCGGACTGCCAATAGCTGCTAAAACACTAGGAGGACTTCTACGTTCAAAGGTAGACACAAATGAATGGAGTTCAATTCTGCACAGCAACGATTACCCACTTGATCGGAAGAAATTGGTTTTGTTATGGATGGCAGAAGGCTTCCTTGATTTTTATCAAGGGGGAAAAGTGGCGGAGGAAATAGGTGATGATTGCTTTGTTGAATTGTTATCCAGATCCTTAATTCAACAATCAAATGATGTTCGTGGAAAAATCTTTAACATGCATGACCTTGTCAATGATTTAGCTACAGTTGTATCTGGAAAAAGTTGTTGCAGGTTTGAATGTGGTGACATCTCTGAAAATGTTCGGCATATCTCATATAACCAAGAACGGTATGACACTTCCAAAAAGTTTGAGAATGTCTACAATTTCAAATGCTTGCGAAGCTTCCTATCTATTGCCAACAGATATGGTTTCCATTACATATCCATCAAGGTGGTTAACAATCTCCTACCAACATTCAAAAGGTTGCGTGTGTTATCGCTGTCAAAGTATAAAAACATCACAAAGCTTTCGGATACAATTGGCAATTTACTGCAATTGCGGTATCTAGATCTCTCCGAGACTAGAATCAAAAGCTTGCCTGATACAACATGTAACCTTCACAATTTGCAGACAATGATTTTATCAAGTTGTACGGATCTTGCTGAATTGCCAGTACATATGGGAAATTTAATCAATTTACGTCACCTTGATATCACAAATACAAACATAAAGGAGTTGCCTGTGGAAATTGCAAGACTAGAAAACCTCCAAACTTTGACAGTGTTTGTAGTGGTCAAGCTTAAGATGGACACACTCACTGCTCTTGAAGATTTGTTGCTGGATTGTGAAGGAGAGTTGTCATTTAGTGAAGGTGTTTGTCTACCTCCCAAATTACAATCAATATATCTGCAGTCGAGGGGAATTAGAACAATGCCTCCTGTAACGGAATTGGGTCTTCAAAGCCTAACCGCTCTTTCAAGTTTGTTTATTAGAAGGAGTGATGATATAGTTAACACCATGATGAAGGAGTCATTGCTACCCATCTCCCTTGTGTATTTGGTTATCAGTTATCAATGTAAAATGAAGGCCTTAGATGTAAGTGGGCTTCGACACCTCTCCTCTCTCGAACGTCTTCACTTTGATTATTGTGAAGAGCTTGAGTCATTGCCAGAAAACTGCCTCCTCCCTTCCTCGCTGAAATCACTTTATTTTGTGGATTGTAAAAAGCTAGAGTCAATACCAGAAGACAACCTCCCTGACTCTCTTGAGTTACTGAGGATTTATAAATGCCCATTGTTAGAAGAAAGTGTTCCCATTACAGATGATCAAAGACTAAGTGGATGGAAATCAGCTCACATGATGAATTGA 2502 0.3873 MAATMIGGAFLSATVQTLVEKLASTEFLDYITNTKLNVSLLRQLKTTLLTLQVVLDDAEEKQINNPAVKQWLDDLKDAVFDAEDLLNQISYDSLRCKVENMQAVNKTNQVWNILSSPFKNLYGEINSQMKIMCETLQLFAQHKDILGLKTKSARVSRRTPSSSVVNESVMVGRKDEKETIMNMLLSQRDTTSNNIGVVAILGMGGLGKTTLAQLLYNDKEVQQYFDMKAWVCVSEDFDTMRVTKSLLESVTSRTWDSTNLDLLRVELKKNSRDKRFLFVLDDLWNDNYSDWDELVSPFIDGKPGSRVIVTTRQQKVAEVVHTFPIQKLEPLSNEECWSLLSKHALGSDEFHDSKNTTLEEIGRKIAKKCGGLPIAAKTLGGLLRSKVDTNEWSSILHSNDYPLDRKKLVLLWMAEGFLDFYQGGKVAEEIGDDCFVELLSRSLIQQSNDVRGKIFNMHDLVNDLATVVSGKSCCRFECGDISENVRHISYNQERYDTSKKFENVYNFKCLRSFLSIANRYGFHYISIKVVNNLLPTFKRLRVLSLSKYKNITKLSDTIGNLLQLRYLDLSETRIKSLPDTTCNLHNLQTMILSSCTDLAELPVHMGNLINLRHLDITNTNIKELPVEIARLENLQTLTVFVVVKLKMDTLTALEDLLLDCEGELSFSEGVCLPPKLQSIYLQSRGIRTMPPVTELGLQSLTALSSLFIRRSDDIVNTMMKESLLPISLVYLVISYQCKMKALDVSGLRHLSSLERLHFDYCEELESLPENCLLPSSLKSLYFVDCKKLESIPEDNLPDSLELLRIYKCPLLEESVPITDDQRLSGWKSAHMMN 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00454 833 ProSiteProfiles Leucine-rich repeat profile. 563 584 IPR001611 GO:0005515
Tsu03g00454 833 Coils Coil 41 61 - -
Tsu03g00454 833 SUPERFAMILY L domain-like 457 820 - -
Tsu03g00454 833 Pfam NB-ARC domain 175 397 IPR002182 GO:0043531
Tsu03g00454 833 Gene3D - 330 408 IPR042197 -
Tsu03g00454 833 Gene3D - 14 131 - -
Tsu03g00454 833 Gene3D - 151 323 IPR027417 -
Tsu03g00454 833 PANTHER DISEASE RESISTANCE PROTEIN RP 399 809 IPR044974 GO:0006952
Tsu03g00454 833 PANTHER DISEASE RESISTANCE PROTEIN RP 51 395 IPR044974 GO:0006952
Tsu03g00454 833 PANTHER - 399 809 - -
Tsu03g00454 833 PANTHER - 51 395 - -
Tsu03g00454 833 SMART LRR_typ_2 750 774 IPR003591 -
Tsu03g00454 833 SMART LRR_typ_2 608 631 IPR003591 -
Tsu03g00454 833 SMART LRR_typ_2 561 584 IPR003591 -
Tsu03g00454 833 Gene3D Ribonuclease Inhibitor 477 828 IPR032675 -
Tsu03g00454 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 406 IPR027417 -
Tsu03g00454 833 Pfam Rx N-terminal domain 10 100 IPR041118 -
Tsu03g00454 833 PRINTS Disease resistance protein signature 270 284 - -
Tsu03g00454 833 PRINTS Disease resistance protein signature 582 598 - -
Tsu03g00454 833 PRINTS Disease resistance protein signature 369 383 - -
Tsu03g00454 833 PRINTS Disease resistance protein signature 197 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00454 Tsu-Chr3 3896140 3903423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00454 194 808 WRKY Transcription Factor Family AT5G45050 22.857 4.16e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00454 - - mtr:MTR_3g032370 943.34