Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00433 ATGGCTGCAACTATGATAGGGGGCGCTTTTCTCTCTGCAACTGTTCAGACTTTAGCTGATAAACTTGCTTCAAAAAAGTTTCTTGATTACATCAAAAACACCAAGCTCAATGTCTCACTCTTGAGGCAGTTAAAAACAACACTACTCACTCTTCAGGTTGTGCTGGATGATGCAGAGGAGAAGCAGATCAACAATCCTGCTGTCAAACAATGGCTTGATGATTTGAAAGATGCCATCTTGGATGCCGAGGATTTGCTCAACCAAATCAGCTATGATTCTCTGCGATGCAAGGTGGAAAATGCACAAGTTGGCAACAAAACTAATCAGGTGTGGAACTTCTTTTCATCTCATTTTAAAAACTTCTATGTAGAGATCAATTCTCAGATGAAGATCATTTGTGAAAGTCTGCAACTTTTTGCACAAAATAAAGATATACTTGGTCTGCAAACTAAAAGTGCAAGAGTTTCTCGTCGAACACCTTCAAGTTCAGTTGTAAATGAATCTGTCATGGTGGGTAGGAAGGATGAAAAAGAGACAATAATGAACATGTTGCTATCACAGAGGGACACAACCAGTAATAATATAGGTGTTGTTGTAATTTTGGGCATGGGAGGTTTAGGAAAAACTACCCTTGCCCAACTTCTTTACAACGATAAAGAAGTTCAACAATATTTTGATATGAAGGCCTGGGTTTGTGTGTCTGAGGATTTTGATACTATGAGAGTAACCAAGTCTCTCCTTGAATCTATCACTTCCAAAACTTGGGAAAGTAATAATCTTGATATCCTTCGGGTTGAATTAAAGAAAAACTCGAGGgagaaaagatttttgtttgtgTTAGATGATTTGTGGAATGATAATTACAATGATTGGGATGAGCTTGTAAGTCCCTTCATTCATGGAAAACCTGGAAGCAGGGTGATTGTAACAACACGCCAACAAAACGTTGCAGAGGTGGCACACACATTTCCTGTTCAAAAATTAGAACCACTGTCAAATGAAGAATGTTGGTCTTTACTCTCAAAGCATGCATTGGGAAGTGATGAGTTTCATGATAGTAAAAACACATCCCTTGAAGAAATTGGAAGGAACATTGCAAGAAAGTGTGGTGGATTGCCAATAGCTGCTAAAACATTAGGAGGACTTCTGCGTTCAAAGGTAGACGCAAATGAGTGGAATTCAATTTTGAACAGCAATGTATGGAACTTaccaaataataatattcttcCTGCTTTGCATTTGAGTTATCAATATCTTCCCTCTCATTTGAAAAGATGTTTTGcatattgttcaatttttccaAAGGATTACCCACTTGATCGGAAGAAATTGGTTTTGTTATGGATGGCAGAAGGCTTCCTTGATTGTTATCAAGGGGGAAAAGCGGCGGAGGAATTTGGTGATGATTGCTTTGTTGAATTGTTATCCAGATCCTTAATTCAACAATCAAATGATGATGTTCATGGAAAAATCTTTAACATGCATGACCTTGTCAACGATTTAGCTACAGTCGTATCTGGAAAAAGTTGCCGTAGGTTTGAATGTGGTGACATCTCTGAAAATGTTCGGCATATCTCATATAACCATGAAAGGAATGACATTTTCAAAAAGTTTGAGAATATATACGATTTCAAATTGTTGCGAAGCTTCCTGTCTAGTACCTCAGGGTATCCTTTCCGTTTCATATCCATGAAGGTGGTTAACGATCTTATACCAACATTGAAAAGGTTGCGTGTGTTATCGCTGTTGGGGTACAGAAACATCACAAAGCTTCCGGATACAATTGGGAATTTGCTGCAATTGCGTTATCTAGATCTCTCCGGGACTCAAATAAAAAGCTTGCCTGATACAACATGTAACCTTCACAATTTGCAGACAATGATTTTATCAAGTTGTACGGATCTTGTTAAATTTCCAGTACATATGGGAAATTTAATCAATTTACGTCACCTTGATATCACAAATACAAACATAAAGGAGTTGCCTGTGGAAATTGCAAGACTAGAAAACCTCCAAACTTTGACAGTTTTTGTAGTGGGTAAGCAACATGTAGGGTTAAGCATCAAAGAGCTAAGGAAATTCACAAACCTACAGGGAAAACTTACCATCAAGGACTTGCATAATGTCATTGATGCCAGGGAAGCAGAAGATGCCAACTTGAAAAGCAAAGAGAAAATTGAGAAGTTAGAGTTGTTATGGGGCAAACAAAGTGAAGACTCGCAAAAAGTGAAAGCTGTGTTTGCTATGTTGCAACCAGCAATAAACCTGAAGAGCCTGAATATTGGGATGTATGGCGGGACAAGTTTTCCGAGTTGGTTGGGAAATTCGTCGTTTTCTAATTTGGTGTCCCTTCGCATCAATAATTGTGAACATTGCATGACACTTCCACCGCTAGGGCAGCTACCTTCTCTCAAAGACCTAGAAATACATGGTATGGAGATATTGGAGACAATTGGCCCAGAGTTCTATTGTGCACAGGGAGGAGAATGTTCCAATACTTCCTTCCAACCATTTCTATCCCTTGAGCGTATAAAATTTGACAGCATGCCAAGTTGGAAGGAATGGCTTCCGTTTGAAGGCATAAACTTTGCTTTTCCTCAACTTAGAACTATGGAGTTACTTAACTGTCCAGAACTAAGAGGACATTTGCCAAGCCACCTTCCTTGTATAGAAGAAATTGTAATAGAAGATTGTGCTCAACTATTGGAAACACCTTCCACTTTGCATTGGCTGTCgtcaataaagaaaattaaaatcaacGGGCTTGCTGAAAGGACCCAATTATCATTGCTTGAGAGTGATTCACCATGTACGATGCAAGATGTAGTGATTGAAGAGTGTGTTACGCTATTATCTTtgccaaaattgattttgagaagCACTTGTCTTCAACACTTGAAACTTGATTCTCTTTCTTCTCTAACAGCATTTCCCTCAAGTGGTCTACCCGCTTCATTGCAATCACTTAGTATTGGAAACTGTGAGAATGTATCCTTCCTTCCTCCTGAAACGTGGAGAAATTACACATCGCTTGTGCGTCTTGAGTTACGATGTAGCTGTGATGCACTTACATCATTTCCACTTGATGGTTTTCCTGCTCTCCAAACACTTACAATAGATAGTTGTAAGAGTCTGGATTCCatttatattttagaaagtCCTTCACATCAGCCGTCAAACCTCCAATCACTTAATATCACATGCCTTTGTTCGTTTAAAGTCAAGCTGAAGATGGACACACTCACTGCTCTTAAAGATTTGTCGCTGCGTTGTGTAGGAGAGTTGTCATTTTGTGAAGGTGTTTGTCTACCTCCCAAATTACAATCAATAGATCTGCATTCGAGGGGAAGAACAATGCCGCCTGTAAAGGAATGGGGCCTTCAAGGCCTAACTGCTCTTTCAAGGTTGAATATTGGAAGTAATGATGATATAGTTAACACCTTGATGAAGGAGTCGTTGCTACCCATCTCCCTTGTGCATCTGACTatccaaaattataaaatgaagGCCTTTGATGTAAGTGGGCTTCGACACCTCTCCTCTCTCAAATATCTTATCTTTTCTAATTGTAAAGAGCTTGAGTCATTGCCAGAAAACTGCCTCCTCCCTTCCTCGCTGAAATCACTTCAATTTTGGCATTGTTCCAGACTTGAGTCATTACCAGGAAACTGCCTCCCTTCTTCGCTGAAATCACTTCAATTTTGGGATTGTGAAAAGCTAGAGTCATTACCAGAGGACAACCTCCCTGACTCTCTTGAGATACTGGAAATTTGGAGTTGCCCATTGTTAGAAGAAAGGGGGGAGGATGATTATATGCCTGGAAGCATTTTAGAGATTGAGCTTTGCAATTTCATGACATTTGATTACTTAAAATGTAAACCCGGGCCTCGGTTGAATCTCGTAATTGGTCCCAATGGTTCGGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTTGGCCTCTGCGGAGAGCCTAAGTTGCTTGGGCGAGGCACGAGAATCGGGTTATATGTGaagagggaagaagaagaagggcaTGTTAAGATTACCTTGAGAGGGGACAATAAAGAGAATCACATTACGATTATGCGTAAAATAAATACTAGCAACAAGTCTGAATGGTTTTTAAATGGAAATATTGTGGCCAAAAAGGATGTGGCTGATACCATTCAGAGGTTTAACATCCAAGTAAATAATTTGACTCAATTTTTACCACAAGATAGGGTCTGTGAGTTTGCAAAGTTAACTCCTGTGCAACTTTTGGAAGAGACTGAAAAGGCTGTTGGTGATCCACTGCTTCCAGAGCAACATCGTGCACTAATTGATAAAAGTCGTGAATTAAAGCATGTTGAGCTGTCTCTTGAGAAAAATGAAGGAACTTTAAATCAGTTGAAGGAACGTAATGCTGAATTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGATGAACTTCTTGCGAAGGCCAAATCAATGCAAAAGAAATTGCCATGGCTGAAGTATGACATGAAGCAGGCAGAATATCGTGAAGCTAAGGAGCGTTGTTCGATTAATAATTGTAGAAATTATAATTTGTCATGCTTtaacaagaaacaaaaagatGAGAAAACTGCATTAGATGCAAAATGCAAAAAGGTTAGCAACCGAATAAATGAGAATAGCAAGAAGAGAATGGGACTTATGGAGAAAGAGAACCAATTGTCTTTTATAACACAGGATCCTTGTGATCGGGACTTTTTGGCGAACAACCTACGGAACTATGATGTACCAGTTATAAATTATACTTGTCCTGATAGCAACCAAAGAGTGCCGCCTCCTGAAATATCTGCCGATATGCGTGCTCTTGGTATCAACTCCCGTTTGGACCAAATTTTCCATGCCCCTGTTGCTGTCAAGGACGTGTTGATTAGCGGATTCAAACTTGATCATTCATTTATTGGATCGAAAGAAACTGATCAGAAAGCTCAGGAGGTCCGGAAATTGGGAATTACTAGTTTATGGACACCAGATAATCACTATCACTGGTCTAAGTCTAGATATGGAAATCATGTCTCAGTACTTGTGGATCAAGTGCGACACCCACGACTTCTTCTGAATAATTTAAATGTGAGGGACATTGAGAAACTGAGCTTCCAGGAAAGGGAGCATCAAGAACACATTGCTTCCTTGGAGGAAAGTATCAAAAGGTTTCAAGACAAGGAAAAATGCTTACGGAATCAGGCTGCTAATCTTCGTGAACAGAAGGAGGGCGTTAGTAATACACTAcagaatgagagaaaaaaacgGCAAGCAATAATTCAGTATATTGAACAAAAGAAAGGGATACTGAAGTCAATGGAGGAGCAGGATGACTTAGATACCGAATTAGTGAAGCTTGTTGATCAGGCAACAGAATGTAACATTCAGCGATTTCATaatgcaattaaaattaagGATATTCTTGTTGAATCTGTGGGTTACAGTCAAAGTTTTGTTGAACAACGAATGGCTTTCTTTGAATTTGATGCAAAGATTGGAGAAATGGAGGCCAATCTGAAGCATCATGAAAATTTTGCACAGCAAGCATCATTGCACTTTAACAACTCAAAGAAAGAGGCCGATGAATGTAGACTGAAGCTTACAGATTTATTGAACTATGCTAAATCAATTGGCCAACTTACACCTAACGTAGAGAAGGAATTTCTTGAGATGCCTTCTACAATTGAGGAGTTGGAAGAAGCTATCCAAGATACAACTTCTCAAGCTAATTCAATCCTTTTTATCAATAATAACATATTGAAAGAATATGAGGATCGTCAAAGACAGATTGAAGATCTTTCAACAAAACTTGATGCAGACAAGAAGGAATCTAGAAGGTGTCTAGCTGAAGTGGATAACATTAAGGGAAAATGGCTTCCAACACTCAGAAACCTTGTCGCCCagataaatgaaatttttagtcaaaattttcaACAGATGGCTGTTGCTGGAGAAGTTTCACTAGATGAACATGATATGGACTTCGATAAATTTGGAATACTTATAAAAGTCAAATTCAGAGAAAATGGACACCTTGAAGTTCTCAGTGCCCATCATCAATCTGGAGGGGAGAGATCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGTCCATTTAGAGTTGTTGATGAGATCAATCAAGGTATGGACCCAATAAATGAAAGGAAAATGTTTCAGCAATTAGTGAGAGCAGCAAGCAAGCCAAATACACCACAGTGTTTCTTACTTACCCCAAAGTTGTTACCAGATCTCCAATATAGTGAGGCATGCAGTATATTGAATGTAATGAATGGCCCTTGGATTGAGCAACCCTCAAAGATTTGGAGTACCACTGGTGATCAATGGAGTATTATCACTGGAAATGTTGAATgttaa 6402 0.3793 MAATMIGGAFLSATVQTLADKLASKKFLDYIKNTKLNVSLLRQLKTTLLTLQVVLDDAEEKQINNPAVKQWLDDLKDAILDAEDLLNQISYDSLRCKVENAQVGNKTNQVWNFFSSHFKNFYVEINSQMKIICESLQLFAQNKDILGLQTKSARVSRRTPSSSVVNESVMVGRKDEKETIMNMLLSQRDTTSNNIGVVVILGMGGLGKTTLAQLLYNDKEVQQYFDMKAWVCVSEDFDTMRVTKSLLESITSKTWESNNLDILRVELKKNSREKRFLFVLDDLWNDNYNDWDELVSPFIHGKPGSRVIVTTRQQNVAEVAHTFPVQKLEPLSNEECWSLLSKHALGSDEFHDSKNTSLEEIGRNIARKCGGLPIAAKTLGGLLRSKVDANEWNSILNSNVWNLPNNNILPALHLSYQYLPSHLKRCFAYCSIFPKDYPLDRKKLVLLWMAEGFLDCYQGGKAAEEFGDDCFVELLSRSLIQQSNDDVHGKIFNMHDLVNDLATVVSGKSCRRFECGDISENVRHISYNHERNDIFKKFENIYDFKLLRSFLSSTSGYPFRFISMKVVNDLIPTLKRLRVLSLLGYRNITKLPDTIGNLLQLRYLDLSGTQIKSLPDTTCNLHNLQTMILSSCTDLVKFPVHMGNLINLRHLDITNTNIKELPVEIARLENLQTLTVFVVGKQHVGLSIKELRKFTNLQGKLTIKDLHNVIDAREAEDANLKSKEKIEKLELLWGKQSEDSQKVKAVFAMLQPAINLKSLNIGMYGGTSFPSWLGNSSFSNLVSLRINNCEHCMTLPPLGQLPSLKDLEIHGMEILETIGPEFYCAQGGECSNTSFQPFLSLERIKFDSMPSWKEWLPFEGINFAFPQLRTMELLNCPELRGHLPSHLPCIEEIVIEDCAQLLETPSTLHWLSSIKKIKINGLAERTQLSLLESDSPCTMQDVVIEECVTLLSLPKLILRSTCLQHLKLDSLSSLTAFPSSGLPASLQSLSIGNCENVSFLPPETWRNYTSLVRLELRCSCDALTSFPLDGFPALQTLTIDSCKSLDSIYILESPSHQPSNLQSLNITCLCSFKVKLKMDTLTALKDLSLRCVGELSFCEGVCLPPKLQSIDLHSRGRTMPPVKEWGLQGLTALSRLNIGSNDDIVNTLMKESLLPISLVHLTIQNYKMKAFDVSGLRHLSSLKYLIFSNCKELESLPENCLLPSSLKSLQFWHCSRLESLPGNCLPSSLKSLQFWDCEKLESLPEDNLPDSLEILEIWSCPLLEERGEDDYMPGSILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPKLLGRGTRIGLYVKREEEEGHVKITLRGDNKENHITIMRKINTSNKSEWFLNGNIVAKKDVADTIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPLLPEQHRALIDKSRELKHVELSLEKNEGTLNQLKERNAELEKDVERVRQRDELLAKAKSMQKKLPWLKYDMKQAEYREAKERCSINNCRNYNLSCFNKKQKDEKTALDAKCKKVSNRINENSKKRMGLMEKENQLSFITQDPCDRDFLANNLRNYDVPVINYTCPDSNQRVPPPEISADMRALGINSRLDQIFHAPVAVKDVLISGFKLDHSFIGSKETDQKAQEVRKLGITSLWTPDNHYHWSKSRYGNHVSVLVDQVRHPRLLLNNLNVRDIEKLSFQEREHQEHIASLEESIKRFQDKEKCLRNQAANLREQKEGVSNTLQNERKKRQAIIQYIEQKKGILKSMEEQDDLDTELVKLVDQATECNIQRFHNAIKIKDILVESVGYSQSFVEQRMAFFEFDAKIGEMEANLKHHENFAQQASLHFNNSKKEADECRLKLTDLLNYAKSIGQLTPNVEKEFLEMPSTIEELEEAIQDTTSQANSILFINNNILKEYEDRQRQIEDLSTKLDADKKESRRCLAEVDNIKGKWLPTLRNLVAQINEIFSQNFQQMAVAGEVSLDEHDMDFDKFGILIKVKFRENGHLEVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKIWSTTGDQWSIITGNVEC 2133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00433 2133 CDD ABC_SMC5_euk 2008 2110 - -
Tsu03g00433 2133 Pfam NB-ARC domain 175 397 IPR002182 GO:0043531
Tsu03g00433 2133 Gene3D - 1930 2106 IPR027417 -
Tsu03g00433 2133 SMART LRR_typ_2 645 668 IPR003591 -
Tsu03g00433 2133 SMART LRR_typ_2 598 621 IPR003591 -
Tsu03g00433 2133 SMART LRR_typ_2 1179 1203 IPR003591 -
Tsu03g00433 2133 Gene3D Ribonuclease Inhibitor 1101 1276 IPR032675 -
Tsu03g00433 2133 SUPERFAMILY L domain-like 494 921 - -
Tsu03g00433 2133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 430 IPR027417 -
Tsu03g00433 2133 Coils Coil 1920 1947 - -
Tsu03g00433 2133 SUPERFAMILY L domain-like 949 1265 - -
Tsu03g00433 2133 Gene3D Ribonuclease Inhibitor 941 1092 IPR032675 -
Tsu03g00433 2133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1871 2086 IPR027417 -
Tsu03g00433 2133 Pfam Rx N-terminal domain 10 103 IPR041118 -
Tsu03g00433 2133 Gene3D - 330 414 IPR042197 -
Tsu03g00433 2133 Coils Coil 41 61 - -
Tsu03g00433 2133 Coils Coil 1711 1759 - -
Tsu03g00433 2133 Gene3D - 1277 1479 IPR027417 -
Tsu03g00433 2133 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1565 2130 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Tsu03g00433 2133 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1270 1565 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Tsu03g00433 2133 Coils Coil 68 88 - -
Tsu03g00433 2133 Gene3D - 151 323 IPR027417 -
Tsu03g00433 2133 ProSiteProfiles Leucine-rich repeat profile. 600 621 IPR001611 GO:0005515
Tsu03g00433 2133 Gene3D - 415 504 IPR036388 -
Tsu03g00433 2133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1276 1534 IPR027417 -
Tsu03g00433 2133 Coils Coil 712 732 - -
Tsu03g00433 2133 Coils Coil 1446 1487 - -
Tsu03g00433 2133 Gene3D Ribonuclease Inhibitor 541 934 IPR032675 -
Tsu03g00433 2133 CDD ABC_SMC5_euk 1274 1420 - -
Tsu03g00433 2133 PRINTS Disease resistance protein signature 270 284 - -
Tsu03g00433 2133 PRINTS Disease resistance protein signature 369 383 - -
Tsu03g00433 2133 PRINTS Disease resistance protein signature 619 635 - -
Tsu03g00433 2133 PRINTS Disease resistance protein signature 197 212 - -
Tsu03g00433 2133 Gene3D - 15 131 - -
Tsu03g00433 2133 Pfam RecF/RecN/SMC N terminal domain 1276 2076 IPR003395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00433 Tsu-Chr3 3663754 3683662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00433 1566 2124 Structural Maintenance of Chromosomes family AT5G15920 59.213 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00433 - - mtr:MTR_3g032370 1792.32