Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00430 ATGGCGGAATCTCGCCCACCTAAGCGCCACAAAGTTAGCAGGGGTGATGATGATTATATGCCTGGAAACATTTTAGAGATCGAGCTTTATAATTTCATGACATTTGATTACTTAAAATGTAAACCTGGGCCTCGGTTGAATCTCGTAATTGGGCCTAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTTGGCCTATGTGGAGAGCCCCAGTTGCTTGGGCGAGCCACGAGTGTCGGGGCATATGTGAAGAGGGGAGAAGAATCTGGGCATGTTAAGATTACCTTAAGGGGAGACCAGAAAGAAGAGAACATTACGATTATGCGTAAAATAAATACTAGCAACAAGTCTGAATGGTTTTTCAATGGAAACACTGTGGCCAAAAAGGATGTGGCTGAAACCATTCAGAGGTTTAACATCCAAGTAAATAATTTGACTCAATTTTTACCGCAAGATAGGGTCTGTGAGTTTGCAAAGTTAACTCCTGTGCAACTTCTGGAAGAGACTGAAAAGGCTGTTGGTGATCCACAACTTCCAGAGCAACATCGTGCACTAATTGATAAAAGTCGTGAATTAAAGCATGTTGAGCTGTCTATTGAGAAAAATGAAGGGACTTTAAATCAGTTGAAGGAACGTAATGCTGAATTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGATGAACTTCTTGCCAAGGCTGAATCAATGAAAAAGAAATTGCCATGGCTGAAGTATGATATGAAGCAGGCAGAATATCGTGAAGCTAAAGAACGTGAGAAGATTGCAGCAAAGGAGTTTCAGAAAGCtgcaaaattattaaatgaacTTAAAGAGCCTATTAAGAAACAAAAGGATGACAAAGCTACATTAGAAGCAAAATGCAAAAAGGTTAATAACCGAATAGACGAGAATTCCAAGAAGAGAATGGAACTTAAGGAGAAAGAGAACCAATTGGAAGTGGAGTTACAAGGAAAGTACAAAGAGATGGACGAGTTGAAGAGGCAGGAAGAAACTCGGCAACAGAAATTTATCAATGCTAGGGAGGAACTTGCTGCTGCTGAACTTGAACTTAAGAATCTAGACCCTTTTCTACCTCCCAAGGATGAGCTTCAAAGACTGAGAGATGAAACTCTGGAGTTGGATGGTTATGCTAGTCAAGCGAGAGATAATAAGTCACAAACAGAAAACGAAATAAAGGTTAAAAGGTCCTCCTTAGGGAGGTGTAAAGACAGGTTGGATGAAATGGGTAATAAAAATACCAATTGTTtgtatacattaaaaaaatctgGGGTCGAAAAAATTTCTGATGCTTATAATTGGGTCAAAGCACATCGCCATGAATTTAACAAGGAAGTTTATGGTCCAGTATTACTAGAGGTGAATGTCCCTGATCAGTCTCATGCTGGATATCTAGAGGGTCAAGTTGCTTGGTACACTTGGAAGTCTTTCATAACACAGGATCCTCATGATCGGGACTTTTTGGTGAACAACCTACGGAATTTCGATGTACCAGTTTTAAATTACACTCGTGATAGCCGACAAAGAGAGCCGCCTCCTGAAATATCTCCCGATATGCGTGCTCTTGGTGTCTACTCCCGTTTGGACCAAATTTTTGATGCTCCTTTTGCTGTCAAGGAGGTTTTGATTAGCCAATCTAATCTTGATCATTCCTTCATTGGATCAAAAGAAACTGATCAGAAAGCTGACGGGGTCCCAAAATTAGGAATTACTAGTTTATGGACACCAGAAAACCACTATCACTGGTCTAAGTCTAGATATGGAAATCATGTCTCGGCAGTTGTTGAACAAGTTGAACGCCCAAAACTTCTACTGAATAatttaaatatgaGGGACATTGAGGATCTGAGGTCCCAGGAAAGGGAGCTTAAAGAACAAATTGCTTCCTTGGTGGAAATTATGAAACGGTTTCAAGACGAGGAAAGAAGCTTTGTGAATCAGGCTGCTAATCTTCGTAAACAGAGTGAGGCCATTCGTAAGGAAGCACAAATAAAGAAACAAGAGCGAGACGCAATAAATAGGCGTATTGAACAAAAGAAAGCAAAACTgaaattgatggaggagcaaGATGATTTGGATACTGAGTTAGCAAAGCTTGTTGATCAGGCAACAAAATGTAACATTCAGCGTTTCCATaatgcaattaaaattaagGATCTTCTTGTTGAAGCTGCGGGTTACAGACGAAATTATGTTGAACAACGTATGGCTTGCATTGAATTTGATGCAAAGATTAAAGAAGTAGAGGCCAATCTGAAGCAGCATGAAGATTTAGCTCTGCAGGCATCATTGCAATTTAATAACTCTAAGAAAGAGGCTGAAGAATGTAAACTGAAGCTTACAGATTTATTGAACTATGCTAAGTCAGTTGCTCGGCTTACACCTAACCTAGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAGTTGGAAGCAGCTATCCAAGATACAACTTCTCAAGCCAATTTAATCCTTTTTGTCAATTCTAACATATTGGAACAATATGAGGATCGTCAAAGACAGATAGAAGATCTTGCAAAAAAACTTGATGCAGACAAGAAGGAATCTAGAAGGTGTCTAGCGGACCTGGATAACATTAAGGGAAAATGGCTCCCAACACTGAGAAACCTTGTGGCCCAGATAAATGAAACTTTTAGTAGAAATTTTCAACAGATGGCTGTTGCCGGAGAAGTTTCACTAGATGAGCATGATATGGACTTTGATCAATATGGAATACGTATAAAAGTCAAATTCAGGGAAAATGGACAGCTTGAAGTTCTCAGTGCCCATCATCAATCTGGAGGGGAGCGGTCAGTTTCAACTATTGTTTATCTCGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATAAATCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTTCAGCAATTGGTGAGAGCAGCAAGCAAGCCAAATACACCACAGTGTTTCTTGCTTACCCCAAAGTTGTTACCAGATCTCCAATATAGTGAGGCATGCAGTATATTGAATGTAATGAATGGCCCTTGGATTGAACAACCCTCAAAGGTCTGGACTACTGGTGATCGATGGAGTACTATCTCTGGGCATGTTGGAGAGACCCGATGttaa 3159 0.3928 MAESRPPKRHKVSRGDDDYMPGNILEIELYNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSVGAYVKRGEESGHVKITLRGDQKEENITIMRKINTSNKSEWFFNGNTVAKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALIDKSRELKHVELSIEKNEGTLNQLKERNAELEKDVERVRQRDELLAKAESMKKKLPWLKYDMKQAEYREAKEREKIAAKEFQKAAKLLNELKEPIKKQKDDKATLEAKCKKVNNRIDENSKKRMELKEKENQLEVELQGKYKEMDELKRQEETRQQKFINAREELAAAELELKNLDPFLPPKDELQRLRDETLELDGYASQARDNKSQTENEIKVKRSSLGRCKDRLDEMGNKNTNCLYTLKKSGVEKISDAYNWVKAHRHEFNKEVYGPVLLEVNVPDQSHAGYLEGQVAWYTWKSFITQDPHDRDFLVNNLRNFDVPVLNYTRDSRQREPPPEISPDMRALGVYSRLDQIFDAPFAVKEVLISQSNLDHSFIGSKETDQKADGVPKLGITSLWTPENHYHWSKSRYGNHVSAVVEQVERPKLLLNNLNMRDIEDLRSQERELKEQIASLVEIMKRFQDEERSFVNQAANLRKQSEAIRKEAQIKKQERDAINRRIEQKKAKLKLMEEQDDLDTELAKLVDQATKCNIQRFHNAIKIKDLLVEAAGYRRNYVEQRMACIEFDAKIKEVEANLKQHEDLALQASLQFNNSKKEAEECKLKLTDLLNYAKSVARLTPNLEKEFLEMPTTIEELEAAIQDTTSQANLILFVNSNILEQYEDRQRQIEDLAKKLDADKKESRRCLADLDNIKGKWLPTLRNLVAQINETFSRNFQQMAVAGEVSLDEHDMDFDQYGIRIKVKFRENGQLEVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTTGDRWSTISGHVGETRC 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00430 1052 Gene3D - 23 228 IPR027417 -
Tsu03g00430 1052 Coils Coil 837 864 - -
Tsu03g00430 1052 Gene3D - 843 1022 IPR027417 -
Tsu03g00430 1052 CDD ABC_SMC5_euk 925 1027 - -
Tsu03g00430 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 993 IPR027417 -
Tsu03g00430 1052 Coils Coil 194 235 - -
Tsu03g00430 1052 Coils Coil 275 351 - -
Tsu03g00430 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 18 1050 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Tsu03g00430 1052 Coils Coil 746 773 - -
Tsu03g00430 1052 Pfam RecF/RecN/SMC N terminal domain 24 993 IPR003395 -
Tsu03g00430 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 278 IPR027417 -
Tsu03g00430 1052 CDD ABC_SMC5_euk 22 179 - -
Tsu03g00430 1052 Coils Coil 614 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00430 Tsu-Chr3 3634774 3650790 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00430 1 1044 Structural Maintenance of Chromosomes family AT5G15920 61.111 0.0 1279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00430 K22803 - gmx:100778678 1614.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00430 03 3634774 3650790 Tsu03g00430 03 3634774 3650790 ECH