Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00420 ATGGCTCTCTATTCCAAAACACAACCATACACAAAAACACTCACAATAACCacattcattttcttcttccttctacTCACTCTTCCACACTCCACTTCTGCTTCCACTGATTTCGTTCCTACAACCTGTCTCCGAGTATCTCCCACAAAATTTGTTGATTCTGCCAAAGAAGTTATCACCGTTCTAGAACGCGTCACCTCCATTTTATCAGGCTTCCACATCTTCGGCCATTCTAGTCTCTCAAACGCCATTTCCGATTGCCTTGAATTACTCGATATGTCCTCCGAACAACTTAGTTGGTCTATGTCCGCATCGCAAAATCCCAATGGGAAGGATAACAGTACTGGAAATCTAAGTTCTGACCTAAGAACATGGCTGAGTGCTGTTCTTGTGAATCCAGACACATGTATAGAAGGATTAGAAGGTACAGTTGTGAAGGGTCTTGTATCAAATGCTCTTGATCTTGTAATGTCCTTAGTGAAAAGTCTTCTAGCTGAAGTAGATCCTAGTAATGATCAACTCACAACTTCTACCGGTTCGGAACAATTTCCTTCGTGGATTAACGACGAGGATAAGAAGCTGTTGAAGGAAAATGGAGTGGCTGCTGATGCTGTTGTGGCGGCCGATGGAAGTGGCGATTACCAGAAGGTGATGGATGCAATTTCGGCAGCACCTGAATATAGCATGAAAAGATTTGTTATATATGTTAGGAAAGGTGTCTATGTTGAAAATGTTGAGATTAGTAAGAAGAAATGGAATATTATGATGATCGGTGATGGTATCGATGCTACTATTATCTCCGGTGATCGGAATAAAGTCGATGGTTGGACTACATTTCGATCGGCTACCTTTGCGGTAAATGGTAGAGGGTTTATAGCACGCGATATTTCATTTAAGAACACAGCTGGACCTGAGAAGCATCAAGCAGTGGCATTAAGATCAGACTCTGACCTCTCTGTATTTTATCGTTGTGGGATATTCGGCTATCAAGATAGCCTATATCCCCACGCAATGCGTCAATTCTACAGAGAGTGCAGAATCGCTGGGACAGTGGATTTCATTTTTGGAGATGCCACAGCTGTGTTCCAGAATTGCCAAATACTAGCCAAGAAAGGAAGTCCTGAACAAAAGAATACTATTACTGCTCAAGGACGAAAAGACCCGAATCAACCGACCGGCTTCTCCTTCCAATTTTGCAACATTTCAGCAGACTCAGATCTTCTACCATCGGTTGGAACCATCCAAACATACCTAGGTAGACCCTGGAAGACTTATTCGCGAACAATTTTCATGCAATCCTACTTTAGTAACATAATAAGTCCTGAAGGGTGGTTGGAGATGAACGGAAAGTTTGCTTTGGACACATTGACTTACAGCGAGTACATGAACACTGGACCTGGTGCTGGGGTAGCTAATCGAGTGAAATGGCCAGGATATCGTGTATTGAATGATTCCAGGGAGGCCGAAAAGTTTACTGTGGCACAATTTATTGAAGGGAATTTGTGGTTACCTTCCACTGGTGTTGCTTACACTGCTGGTTTGACAGTGTAA 1551 0.4217 MALYSKTQPYTKTLTITTFIFFFLLLTLPHSTSASTDFVPTTCLRVSPTKFVDSAKEVITVLERVTSILSGFHIFGHSSLSNAISDCLELLDMSSEQLSWSMSASQNPNGKDNSTGNLSSDLRTWLSAVLVNPDTCIEGLEGTVVKGLVSNALDLVMSLVKSLLAEVDPSNDQLTTSTGSEQFPSWINDEDKKLLKENGVAADAVVAADGSGDYQKVMDAISAAPEYSMKRFVIYVRKGVYVENVEISKKKWNIMMIGDGIDATIISGDRNKVDGWTTFRSATFAVNGRGFIARDISFKNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYPHAMRQFYRECRIAGTVDFIFGDATAVFQNCQILAKKGSPEQKNTITAQGRKDPNQPTGFSFQFCNISADSDLLPSVGTIQTYLGRPWKTYSRTIFMQSYFSNIISPEGWLEMNGKFALDTLTYSEYMNTGPGAGVANRVKWPGYRVLNDSREAEKFTVAQFIEGNLWLPSTGVAYTAGLTV 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00420 516 PANTHER PECTINESTERASE 46 514 - -
Tsu03g00420 516 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 46 514 - -
Tsu03g00420 516 Gene3D - 198 514 IPR012334 -
Tsu03g00420 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 156 IPR035513 -
Tsu03g00420 516 Pfam Plant invertase/pectin methylesterase inhibitor 30 154 IPR006501 GO:0004857
Tsu03g00420 516 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Tsu03g00420 516 SMART PMEI_2 6 155 IPR006501 GO:0004857
Tsu03g00420 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 164 IPR035513 -
Tsu03g00420 516 SUPERFAMILY Pectin lyase-like 200 513 IPR011050 -
Tsu03g00420 516 CDD PMEI-like_4 30 167 - -
Tsu03g00420 516 Pfam Pectinesterase 203 500 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00420 Tsu-Chr3 3546156 3549358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00420 19 514 Carbohydrate Esterase AT3G43270 60.506 0.0 654