Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00417 ATGAACAAACCAAGTTGTTCATTGTTTCTCCTATCCTTTCTCATTGTCACTCTCTTTGTGGCTGAAATCGATGGAAGCAAACAAAGTAGAGCTCTTGACAAATTGCAAAAGTCAAAGTTCAATGCAAATTCACAAATTGACATGAATCATTTTAAAGCACAAAAGAATATTTTGCTTGATGCAATGATTCATTCTCAAGATGGTATGAAAGAAAAAGATAGAATTGAGAAGCTACCAGGGCAACCAAATGTGAAATTCTCTCAATATGGAGGGTATGTCACTGTGGACAAATTAGCAGGCCGTGCTTTTTACTATTACTTTGTAGAAGCTGCTCATTCTAAAGAAACATTGCCTCTTCTTCTTTGGCTCAATGGAGGTCCTGGATGCTCATCTCTTGCCTATGGAGCAATGGAAGAACTTGGACCCTTCCGTGTGAACAGTGATGGAAAAACCCTTCACAAAAATAACTATTCATGGAACTATGCTGCAAATGTATTGTTCCTTGAGTCACCAGCTGGGGTAGGATTTTCTTACTCAAACAAATCATCTGATTATGACAACAATGGAGATAGAAAAACAGCTACAGATAACTATGTATTTTTAGTGAATTGGTTAGAGAGATTTCCTGAATATAAGAATAGAGATTTCTACATTACTGGTGAAAGCTATGCTGGTCATTATGTTCCTCAACTTGCACACAATATTCTCTACCATAACAAAAAGGCTAATAGGACTATTGTCAACCTCAAAGGAATTATGATTGGAAATGCAGTGATCAATGATGACACAGATAATAAAGGAATGTATGATTATCTTGCTAGCCATGCAATCATATCAGACCAAGCAGCATATAATATCAACACATTCTGTAATTTCTCATCAAATTCTAATCAAACCACTGAATGCAATGAAGCAACAACTGAAGTTTATAAGAATACATTGTTCATTGATGTGTACAACATCTATGCTCCAGTTTGCACTAATCACAACCTCACTACTCGTCCCAAAAGGATCTCGGTTGCTATTGATCCTTGTAGTGATGATTATATACAAGCATATTTGAATAGGGTTGATGTTCAAGAGGCCCTCCATGCTAATGTGACCAAACTGAAATATGATTGGGAGCCTTGTAGTAATATCATTTCAAAGTGGGGAGATAGTCCTTCAACAATCATTCCCCTTTTACATGAATTCCTTAATAATGGACTAAGGGTGTGGATTTTTAGTGGTGATATTGATGCAAGGGTGCCTGTTACTTCTACCAAATATTCCATTAAAAAGATGAATCTTCCTATTAACACTACTTGGTATCCTTGGTTCATAAATGGAGAGGTTGGTGGCTATGCTGAAGTATATAAAGGAGGTTTAACTTTTGCCACCGTTAGAGAAGCAGGACATCAAGTACCAAGCTACCAACCAGCAAGAGCCCTCTCTCTAATTAAGCATTTCTTAAATGGCACTCCTCTTCCTaatactcaaagattatcagaCTATAAtttattgtaa 1506 0.3619 MNKPSCSLFLLSFLIVTLFVAEIDGSKQSRALDKLQKSKFNANSQIDMNHFKAQKNILLDAMIHSQDGMKEKDRIEKLPGQPNVKFSQYGGYVTVDKLAGRAFYYYFVEAAHSKETLPLLLWLNGGPGCSSLAYGAMEELGPFRVNSDGKTLHKNNYSWNYAANVLFLESPAGVGFSYSNKSSDYDNNGDRKTATDNYVFLVNWLERFPEYKNRDFYITGESYAGHYVPQLAHNILYHNKKANRTIVNLKGIMIGNAVINDDTDNKGMYDYLASHAIISDQAAYNINTFCNFSSNSNQTTECNEATTEVYKNTLFIDVYNIYAPVCTNHNLTTRPKRISVAIDPCSDDYIQAYLNRVDVQEALHANVTKLKYDWEPCSNIISKWGDSPSTIIPLLHEFLNNGLRVWIFSGDIDARVPVTSTKYSIKKMNLPINTTWYPWFINGEVGGYAEVYKGGLTFATVREAGHQVPSYQPARALSLIKHFLNGTPLPNTQRLSDYNLL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00417 501 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 490 IPR001563 GO:0004185|GO:0006508
Tsu03g00417 501 Gene3D - 345 381 - -
Tsu03g00417 501 SUPERFAMILY alpha/beta-Hydrolases 76 490 IPR029058 -
Tsu03g00417 501 Pfam Serine carboxypeptidase 80 486 IPR001563 GO:0004185|GO:0006508
Tsu03g00417 501 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Tsu03g00417 501 PANTHER CARBOXYPEPTIDASE 9 490 - -
Tsu03g00417 501 Gene3D - 391 486 - -
Tsu03g00417 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Tsu03g00417 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Tsu03g00417 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Tsu03g00417 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185|GO:0006508
Tsu03g00417 501 Gene3D alpha/beta hydrolase 69 328 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00417 Tsu-Chr3 3518979 3524859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00417 353 489 Calmodulin-binding Proteins AT2G22960 32.847 9.18e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00417 K16297 - gmx:100783864 738.799