Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00407 ATGGCTGCAACTTTGGTTGGAGGTGCTTTTCTTTCTGCTTCCGTCCAAACCATGATCGACAAACTAACTTCCACAGAGTTTCGTGATTTCATCAACAACAAGAGGCTCAATGTTCCACTCTTGAAGCAGTTACAAACAACACTGTTGGTTCTTCAAGCTGTGCTGGATGATGCAGAGGAGAAGCAGATCAACAATCGTGCTGTCAAACAATGGCTTGATGACTTGAAAGATGCAATCTATGATGCGGAGGATCTGCTGAACCAAATTAGTTACGAATCACTGCGATGCAAGGTGGAGAATACAGAAGCTGCAAACAAAACTAATCAGGTGTGGAACTTCCTTTCATCTCCTTTTAAAAACTTATATGGAGAGATCAATTCCCAAATGAAGATCATGTGCGATAGTCTGCAACTTTTTGCACAGCATAAAGATATCCTTGGTTTGAAAATTAAAACTGGTAGAGTTTCTCATAGAACGCCTTCAAGTTCTATGGTTAATGAATCTTTTATCGTTGGTAGGAAGGATGATAAAGAGACCATAATGAGCACATTGCTATCAGCCAGCGGTACTAGCAATAACAATATAGCTGTTGTTGCAATTTTAGGCATGGGAGGGGTTGGTAAAACAACACTTGCACAACTTGTTTACAATGATGAAAAAGTTCAACAACACTTTGATCTTAAAGCCTGGGCTTGTGTATCAGAAGATTTTGATATCTTGAGAGTAACCAAAACTCTCCTTGAATCTGTTACTTCAAGGTCATGTGATAACAATAATCTTGATTTTATTCGAGTTGAACTAATGAAAAATTTGAGTGacaaaagatttttgtttgtgttggaTGACCTATGGAATGATAATTATAATGATTGGGATGAACTTGTAACTCCTTTGATTAAAGGAAGCTATGGAAGCAGGATCATCATCACAACACGCCAACAGAAAGTGGCAGAGGTTGCACACACATTTCCTATTCATAAATTAGAACTTCTATCAAATGAAGACAGCTGGTCCTTACTCTCAAAGCATGCATTTGGAAATGAAGTCTTTTGTGGCATTAAATACctaaaattagaagaaattgGTAGAAAAATTGCAAGAAAATGTGGTGGATTGCCCATAGCTGCTAAAACACTTGGAGGACTACTGCGTTCGAAAGTAGATATTAAACAGTGGACTGCAGTTCTAAATAGTGACATATGGAGCTTACCAAATGATAATATTTTGCCTGCATTACTTCTGAGTTATCAATATCTTTCCTCTCAATTGAAAAGGTGTTTTGCCTATTGTTCCATTTTCCCGAAGGACTATCCACTTGATAGGAAGCAGTTGGTTTTGTTGTGGATGGCAGAAGGCTTCCTTGATCATTCTCAAGAGGGAAAAGCTATGGAAGAAGTAGGTGATGAGTGTTTTGCTGAATTGTTATCCAGATCATTAATTCAACAACTGCTTGATGATTCTAACGAACAAAAGTTTGCCATGCATGACCTTGTTAATGATTTAGCTACAGTTGTATCTGGAAAAAGTTGTTATAGGCTTGACTTTAGTGGTGACACCACTGAAAATGTTCGTCATTTGTCATATAAACAAGAATTGTATGACACTGCCAATAAGTTTAAGACTTTCTACAAATTCAACTCCTTGAGAAGCTTCCTACCCATTGGGTCCAGGATGATATATAATTTATCTAACAAGGTGGTTGATGATTTGCTTCCCACACTTGGAAAGTTGCGTGTGTTATCGTTATCAAAATATTGTAACATAACCATGCTACCCGACTCAATCGGCAGTTTGGTACAATTGCGATATCTAGATCTCTCTCAGACTGAAATCACAAGCTTGCCTGACATGGTATGCAACCTCTACTATTTGCAAACCTTGAATTTATCTCAGTGCTCAAATCTCACTAAATTGCCAGAACATGTTGGAAAGTTAATTAATTTACGTCACCTTGACATCGACTTTACAAGCATAAAAGAGATGCCAAAGCAAATTGTTGAACTGGAAAACCTTCAAACTTTAACTGTTTTTGTAGTAGGTAAGCAAAATGTTGGTGTAAGTGTTCGAGAGCTTGGGAGGTTTTGTAAAATACAAGGAAAGTTGTTCATCAAGAACCTGCACAATGTCATTGATGTTGTGGAAGCATATGATAGCAACTTGAAGAGCAAAGAAAATATTGATGAATTAGCGCTGCAATGGGGCGATGAAACTGATGATTCACTTAAAGGGAAAGACGTGCTTCAAATGTTAGAACCATCAACAAACTTGAAGAAACTAAGCATTTTCTTTTATGGTGGGACAAGTTTTCCACGTTGGTTGGGagattcttcattttttaacatGGTATCTCTTTGCATCGATAGTTGTGCATATTGTGTGACACTTCCACCACTAGGGCAGCTACCTTCTCTCAAAGACTTGAAGATTGGTAGAATGACAATTTTGGAGACAATTGGGCAGGAGTTCTATGGCAAGGCAGAAGGAGGTTCCTATTCTTCATTCCAACCATTTTCATCCCTTGAGATTCTGGTCtttgagaaaatgacaaatTGGAAAGAGTGGCTTCCCTTTCAAGATGACATATTTCCTTTTCCTCGTCTTAAAACTCTAAAGTTATCTAAGTGTCCTGAACTGAGGGGTTATTTTCCCAGACATCTTCCTTCCAtagaagaaattgaaatatatgCTTGTGATCATCTCTTGGAAACACCACCTACTCATCAATGGCTCTCCAcgataaaaaatattgtaatcgaGGGAGATTCAGATGTTGAAAGCAATACTAAAAGCACCCAATGCTTATTGCTTGAGAGTGATTCTCCATGTCTTCTGCAAGATATAACGATAAATAGCTGTCATATGCTACTATCTGTTCCTAAAATGATTGTAAACAGCACTGGTCTTCGAGAATTGTATCTCCATGGTATTAAGACTCTCACTGCACTTCCAAATAAAGGTCTACCCACTTCTTTGCAATCACTTCGTATTTACGATTGTGACAATTTAACATTCCTACCTCCTGAAACGTGGAAAAATTACACATCACTTGCGACTCTTGAGTTACGGAATAGTTGTGGTTCACTTACCTCCTTCCCATTGAACTGTTTCCCTAAGCTCCAAAGTCTTGACATTTGTGAATGTAGGAGTTTggaatctatttttatttcagaAACTTCTCCCTTTAGCTTCTCAACGCTCCAATATCTTGATGTCAGTTCATGTGAGGCACTTAGATCACTACCTGAAAGGATGGACACCCTCACTGCTCTTGAATATTTAACTCTCTTCGGGTTTCCAAAATTGAAGTTACCAGTTTTCCTACCTCCCAATTTACAATCCATTGAAGTTTGTTCCATGAGAATAACAAAGCCTCTAACAGAGTGGGGTCTCCATGGCTTCACTGCTCTTTCAACAATGAGTATTGGAGGTGATGATATTGTTAACATGTTTCTCAAGGAGCAGAAGCTGCCAATTTCTCTTGTTACTCTAACTATCAAGATTCTCAAAAAAACGAAATCCTTAGAAGAAAATGGACTTCGACACCTCTCCTCTCTAGAAAACCTTTGctttaaattttgtttagagCTTGTGTCATTTCCAGAAACCACCATGCCCTCCTCACTGAAATCACTTTGTTTTTTTGAGTGTCCAAGACTAGAGTCGTTGTCAGAAGACAGCCTGCCTTCTTCTTTTAAACTACTGTGCATTTTTGAATGCCCATTGTTAGAAGAAAGGTGTTTTGCCTATTGTTCCATTTTTCCGAAGGACTATGCACTTGACAGGAAATGGTTGGTTTTGTTGTGGATGGCAGAAGGCTTTCTCGAACATTCTCAAGGCGAAGAAGCAATGGAGCAAGTTGGTGATGAGTACTTTGCTGAACTATTATCCAGATCATTAATTCAACAACTTCATGGTgattttaagaaatcaaaacataaTGAGGAGGGCAGAGATTTTTCTGGCAATGACACAAGCTCTGAACACTCAGAAAAGCAAAGGCATTCTAGAGAGGAGAGGTGTCGAAGTCCATTTCCTTCTAAGGATTTTGTTTCAGAGAGATTCATTATGTTTAGAGAAACCAGGGAAATGGGCATCTTCTGCTCCTTGAGAAACATGTTAACAATATCATCACCTCCAATAGGCATTTTTGAAAGAGTAGTGAGGCCTTGGAGACCAAATTCTGTTACAGGCTTTGTTATTCTCACAGAATTAACTCCAATGATTCATAAATTGGGAGGTAAGTTAAGGAAGCTTGTTTCATGA 4263 0.3723 MAATLVGGAFLSASVQTMIDKLTSTEFRDFINNKRLNVPLLKQLQTTLLVLQAVLDDAEEKQINNRAVKQWLDDLKDAIYDAEDLLNQISYESLRCKVENTEAANKTNQVWNFLSSPFKNLYGEINSQMKIMCDSLQLFAQHKDILGLKIKTGRVSHRTPSSSMVNESFIVGRKDDKETIMSTLLSASGTSNNNIAVVAILGMGGVGKTTLAQLVYNDEKVQQHFDLKAWACVSEDFDILRVTKTLLESVTSRSCDNNNLDFIRVELMKNLSDKRFLFVLDDLWNDNYNDWDELVTPLIKGSYGSRIIITTRQQKVAEVAHTFPIHKLELLSNEDSWSLLSKHAFGNEVFCGIKYLKLEEIGRKIARKCGGLPIAAKTLGGLLRSKVDIKQWTAVLNSDIWSLPNDNILPALLLSYQYLSSQLKRCFAYCSIFPKDYPLDRKQLVLLWMAEGFLDHSQEGKAMEEVGDECFAELLSRSLIQQLLDDSNEQKFAMHDLVNDLATVVSGKSCYRLDFSGDTTENVRHLSYKQELYDTANKFKTFYKFNSLRSFLPIGSRMIYNLSNKVVDDLLPTLGKLRVLSLSKYCNITMLPDSIGSLVQLRYLDLSQTEITSLPDMVCNLYYLQTLNLSQCSNLTKLPEHVGKLINLRHLDIDFTSIKEMPKQIVELENLQTLTVFVVGKQNVGVSVRELGRFCKIQGKLFIKNLHNVIDVVEAYDSNLKSKENIDELALQWGDETDDSLKGKDVLQMLEPSTNLKKLSIFFYGGTSFPRWLGDSSFFNMVSLCIDSCAYCVTLPPLGQLPSLKDLKIGRMTILETIGQEFYGKAEGGSYSSFQPFSSLEILVFEKMTNWKEWLPFQDDIFPFPRLKTLKLSKCPELRGYFPRHLPSIEEIEIYACDHLLETPPTHQWLSTIKNIVIEGDSDVESNTKSTQCLLLESDSPCLLQDITINSCHMLLSVPKMIVNSTGLRELYLHGIKTLTALPNKGLPTSLQSLRIYDCDNLTFLPPETWKNYTSLATLELRNSCGSLTSFPLNCFPKLQSLDICECRSLESIFISETSPFSFSTLQYLDVSSCEALRSLPERMDTLTALEYLTLFGFPKLKLPVFLPPNLQSIEVCSMRITKPLTEWGLHGFTALSTMSIGGDDIVNMFLKEQKLPISLVTLTIKILKKTKSLEENGLRHLSSLENLCFKFCLELVSFPETTMPSSLKSLCFFECPRLESLSEDSLPSSFKLLCIFECPLLEERCFAYCSIFPKDYALDRKWLVLLWMAEGFLEHSQGEEAMEQVGDEYFAELLSRSLIQQLHGDFKKSKHNEEGRDFSGNDTSSEHSEKQRHSREERCRSPFPSKDFVSERFIMFRETREMGIFCSLRNMLTISSPPIGIFERVVRPWRPNSVTGFVILTELTPMIHKLGGKLRKLVS 1420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00407 1420 PRINTS Disease resistance protein signature 619 635 - -
Tsu03g00407 1420 PRINTS Disease resistance protein signature 197 212 - -
Tsu03g00407 1420 PRINTS Disease resistance protein signature 270 284 - -
Tsu03g00407 1420 PRINTS Disease resistance protein signature 369 383 - -
Tsu03g00407 1420 SUPERFAMILY L domain-like 942 1229 - -
Tsu03g00407 1420 Gene3D - 421 503 IPR036388 -
Tsu03g00407 1420 Coils Coil 41 61 - -
Tsu03g00407 1420 Gene3D - 1233 1316 IPR036388 -
Tsu03g00407 1420 SUPERFAMILY L domain-like 494 919 - -
Tsu03g00407 1420 SMART LRR_typ_2 574 597 IPR003591 -
Tsu03g00407 1420 SMART LRR_typ_2 645 668 IPR003591 -
Tsu03g00407 1420 SMART LRR_typ_2 598 621 IPR003591 -
Tsu03g00407 1420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 430 IPR027417 -
Tsu03g00407 1420 PANTHER DISEASE RESISTANCE PROTEIN RP 51 961 IPR044974 GO:0006952
Tsu03g00407 1420 PANTHER DISEASE RESISTANCE PROTEIN RP 1244 1303 IPR044974 GO:0006952
Tsu03g00407 1420 MobiDBLite consensus disorder prediction 1309 1342 - -
Tsu03g00407 1420 Pfam Rx N-terminal domain 10 100 IPR041118 -
Tsu03g00407 1420 Gene3D - 154 323 IPR027417 -
Tsu03g00407 1420 Gene3D - 15 131 - -
Tsu03g00407 1420 PANTHER - 51 961 - -
Tsu03g00407 1420 PANTHER - 1244 1303 - -
Tsu03g00407 1420 Pfam NB-ARC domain 175 397 IPR002182 GO:0043531
Tsu03g00407 1420 Gene3D - 330 420 IPR042197 -
Tsu03g00407 1420 Gene3D Ribonuclease Inhibitor 707 904 IPR032675 -
Tsu03g00407 1420 Gene3D Ribonuclease Inhibitor 555 706 IPR032675 -
Tsu03g00407 1420 Gene3D Ribonuclease Inhibitor 943 1123 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00407 Tsu-Chr3 3475965 3481208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00407 588 686 WRKY Transcription Factor Family AT4G12020 39.000 9.77e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00407 - - mtr:MTR_3g032370 1463.74