Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00406 ATGGCAGCAACTTTGGTCGGAGGTGCATTTCTCTATGCTTCTGTCCAAACCATGATTGACAAACTAACTTCAACCGAGTTTCGTGATTATATCAACAACAAGAAGCTGAATGTCTCACTCTTGAAGCAGTTACAAACAACGCTGTTGGTTCTTCAAGCTGTGCTGGATGATGCGGAGGAGAAGCAGATTAACAATCGTGCTGTCAAACAATGGCTTGATGACTTGAAAGATGCAATCTATGATGCGGAGGATCTGCTGAACCAAATTAGTTACGAATCACTGCGATGCAAGATGGAGAGTACACAATATGCAAACAAAACTAATCAGGTTTGGAACTTCCTTTCATCTCCTTTTAGAAACATCTATGGAGAGATCAATTCCCAAATGAAGGCCATGTGTGACAGCCTGCAACTTTTTGCACAGCATAAAGATATCCTTGGTTTGCAAAACAAAACTGGTAAATTTTCTCGTAGAATCCCTTCAAGTTCATTGGTTAATGAATCTATCATGGTTGGTAGGAAGGATGATAAAGAGACAATAATGACCATGTTGCTATCTGAGAGCAGCACCAACAATAACAATATAGGTGTTGTTGCAATTTTAGGCATGGGGGGTGTGGGTAAAACGACCCTTGCACAACTTATTTACAATGATGAAAATGTTCAAGAGCACTTTGATCTCAAAGCCTGGACTTGTGTATCGGaagattttgatattttgagAGTAACTAAAACGCTCCTTGAATCTGTCACTTCAAGAGCATGGGAAAGCAACAATCTTGAATTTCTTCGAGTTGAATTACAGAAAATTGTGAGGGACAAAAGATTTTTGATTGTGTTGGATGACTTAtggaatgacaattataatGATTGGGATGAGCTTGTAACTCCCTTGATTAAAGGAAGTAGTGGAAGCAGAATGATTGTCACAACACGCCAAGAAAAAGTTGCAGTTGTTGCACACACATTTCCTATTCATAAATTAGAAGTTCTATCAGATGAAGAAAGTTGGTCTTTACTCTCAAAGCATGCATTTGGAAGAGAAAATTCTTGTTCCAGTAAATGCCTAAACCTAGAAGCAATTGGTAGAAAGATTGCAAGAAAGTGTGGTGGATTGCCGATAGCTGCTAAAACACTTGGAGGACTATTGCATTCAAAAGTAGATACTAAAGAGTGGACTGCTGTTCTAAACAGCGACATATGGAACTTACCAAATGATAATATTTTGCCTGCATTGCTTTTGAGTTATCAATATCTTTCCTCTCAATTGAAAAGATGTTTTGCCTATTGTGCCATTTTCCCGAAGAATTGTTCACTTGATAGGAAACAATTGGTTTTGTTGTGGATGGCAGAAGGATTCCTTGATCATTCTGAAGACGGAAAAGCCATGGAAGAAGTAGGCGATGAGTGTTTTTCTGAATTGTTATCCAGATCATTACTTCAACAACTACATGGTGATTCTGGAGGTCAAAAGTTTATCATGCATGACCTCGTTAATGATTTAGCTACAGTCGTATCTGGAAAAAGTTGTTACAGACTTGAATTAGGTGGTGAAACCTCTAAAAATGTTCGCTACTTGTCATATAATCAAGAAGAATTTGACATTTTCAAGAAGTTTAAGATTTTGGACAAATGCAAATGCTTGAGAAGCTTCTTCCCCATTGTCTCCAACTGGGATTTAAATTTCTTATCTAGAAACGTGGTTGATGATTTCCTGCCCACGTTAGGAATGCTGCGCGTGTTATcgttatcaaaatatattaacatCACCATGCTACCAGATTCAATTGGCAGTTTAGTGCAGTTGCGCTATCTTGATCTCTCTCGCACTAAAATCAAAAGATTGCCTGACACGACCTGCAACCTCTACTATTTGCAAACCTTAAATTTATCTAGGTGCtcaaaaatcactaaattgcctGAAGATGTTGGAAAGTTAATTAATTTACGTCACCTTGACATTGATTTGACGAGCATAACAGAGTTGCCAAAGCAAATTCTTGAACTAGAAAACCTTCAAACTTTAACTGTTTTTGTAGTAGGTAAGCAAAATGTTGGTTTGAGTGTTAGAGACCTTGGGAGGTTTCCTAAGCTACGGGAAAAATTAATCATCAAGAATCTCCATAATATCATTGATGTTGTAGAGGCATGTGATAGCAACATGAAGAACAAAGAACATATTGAGGAATTAACGTTACAATGGGGCCATAAAATTGATGATTCAGTTAAAGGGAAAGATGTGCTTGATATGTTACAACCATCCGCAAACCTGAAGAAACTGCGGATTGACTTGTATGGTGGAACAAGTTTTCCAAGTTGGTTGGGAGATTCTTCATTTTCTAAACTGGTGTCCCTTGACATCAATAATTGTGCATATTGTGTGACACTTCCACCACTAGGACAGCTACCTTCTCTCAAGGACCTAAGTGTAAAAGGTATGTCGATATTGGAGACAATTGGGCCAGAGTTCTATGGCATGGAAGGAAGAGGTTTCAAATCTTCATTTCAACCATTTCCATACCTTGAGACACTGCTATTTGAGGACATGTCAAATTGGAAGGAATGGCTTCCCCTTCAAGATGACATATTTCCTTTTCCTCGTCTTAAAACTCTTAAGTTATTCAAATGTCCTGAACTGAGGGGATGTTTGCCTAGCCATCTTTCTTCCATAGAAGAAATTGAACTACGTTGTTGTGATAATCTCTTGACAACACCTGCTACTCAGCATTGGCTCtcctcaataaaaaaaatatatatcattggAGATTTGAATTCTACTCAAAAGACTCAATGGTCATTGCTTGAGAGTGATTCAATGTGTGTTTTGCAGAATGCGACGATTGGTTTCTGTGATACGGTATTGTCTATGCCCAAAATGATTCTAAGAAGCACTTGTCTTCAAGACTTGAATCTCTATGATATTCCGTCTCTCACTTCATTTCCGACAGATGGTCTACCCAATTCATTGCAGTCACTTCGAATTAATGGGTGTAATAGTTTATCTTTCCTTCCTCCTGATACATGGAGCAATTACACATCACTTGTGCATTTGAGTTTACTTAATAGTTGTGATACACTTACCTCTTTCTCATTGAATGGTTTCCCTAAGCTCCGAAACCTTTCCATTGATGGTTGTAGGAGTCTTGAATCCATTTTTATTTCAGAAAGTTCTTCCCATCACCCCTCAACCCTCCAATCAATTCTGTTATATAATTGTGACACACTTAGATCACTGCCTCAATGGATGGACACCCTCACAGCTCTTGAAAGTTTGTTTCTCGCCCGTCTTCCAAAACTAGAATTGTCACTATGTGAAGGAGCTTTCTTACCTCCGAAATTacaatcattttttattaattttgtgacTATAAAGGTGCCACCAATAATTGAATGGGGTCTCCAGCGCCTCACTGCTCTTTCAGAATTGAGTATTGGaggtgatgatgatgttgttcaCACCTTGCTGAAGGAGCGGATGCTGCCCATTTCCCTTGTGTCTCTCACAATCATTTATCTCCCTGAAATGAAATGCATAGATAGAAATGGGCTTCGGCACCTCTCCTCTCTCGAAAaacttgaatttgaaatttgtttaggGCTTGAGTCCTTGGAAGAGGTTGTGTTACCATCTTCTCTGAAAACACTTATATTTAACCATTGTCCAAGACTTGAGTCATTGCCAGAAGACAGGCTTCCTTCCTCTCTTAAGCTACTGAGGATTGACAGGTGCCCTGTGTTAGAAGCAAGATATGAAAATGAGAAAGGGAAGCATTGGTCCAACATTGTGCATATCCCTATCATAGAAATAAATGGAAAAGTGACAATATGA 3828 0.3736 MAATLVGGAFLYASVQTMIDKLTSTEFRDYINNKKLNVSLLKQLQTTLLVLQAVLDDAEEKQINNRAVKQWLDDLKDAIYDAEDLLNQISYESLRCKMESTQYANKTNQVWNFLSSPFRNIYGEINSQMKAMCDSLQLFAQHKDILGLQNKTGKFSRRIPSSSLVNESIMVGRKDDKETIMTMLLSESSTNNNNIGVVAILGMGGVGKTTLAQLIYNDENVQEHFDLKAWTCVSEDFDILRVTKTLLESVTSRAWESNNLEFLRVELQKIVRDKRFLIVLDDLWNDNYNDWDELVTPLIKGSSGSRMIVTTRQEKVAVVAHTFPIHKLEVLSDEESWSLLSKHAFGRENSCSSKCLNLEAIGRKIARKCGGLPIAAKTLGGLLHSKVDTKEWTAVLNSDIWNLPNDNILPALLLSYQYLSSQLKRCFAYCAIFPKNCSLDRKQLVLLWMAEGFLDHSEDGKAMEEVGDECFSELLSRSLLQQLHGDSGGQKFIMHDLVNDLATVVSGKSCYRLELGGETSKNVRYLSYNQEEFDIFKKFKILDKCKCLRSFFPIVSNWDLNFLSRNVVDDFLPTLGMLRVLSLSKYINITMLPDSIGSLVQLRYLDLSRTKIKRLPDTTCNLYYLQTLNLSRCSKITKLPEDVGKLINLRHLDIDLTSITELPKQILELENLQTLTVFVVGKQNVGLSVRDLGRFPKLREKLIIKNLHNIIDVVEACDSNMKNKEHIEELTLQWGHKIDDSVKGKDVLDMLQPSANLKKLRIDLYGGTSFPSWLGDSSFSKLVSLDINNCAYCVTLPPLGQLPSLKDLSVKGMSILETIGPEFYGMEGRGFKSSFQPFPYLETLLFEDMSNWKEWLPLQDDIFPFPRLKTLKLFKCPELRGCLPSHLSSIEEIELRCCDNLLTTPATQHWLSSIKKIYIIGDLNSTQKTQWSLLESDSMCVLQNATIGFCDTVLSMPKMILRSTCLQDLNLYDIPSLTSFPTDGLPNSLQSLRINGCNSLSFLPPDTWSNYTSLVHLSLLNSCDTLTSFSLNGFPKLRNLSIDGCRSLESIFISESSSHHPSTLQSILLYNCDTLRSLPQWMDTLTALESLFLARLPKLELSLCEGAFLPPKLQSFFINFVTIKVPPIIEWGLQRLTALSELSIGGDDDVVHTLLKERMLPISLVSLTIIYLPEMKCIDRNGLRHLSSLEKLEFEICLGLESLEEVVLPSSLKTLIFNHCPRLESLPEDRLPSSLKLLRIDRCPVLEARYENEKGKHWSNIVHIPIIEINGKVTI 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00406 1275 Coils Coil 41 61 - -
Tsu03g00406 1275 Gene3D - 153 323 IPR027417 -
Tsu03g00406 1275 Gene3D - 14 129 - -
Tsu03g00406 1275 SMART LRR_typ_2 985 1010 IPR003591 -
Tsu03g00406 1275 SMART LRR_typ_2 599 622 IPR003591 -
Tsu03g00406 1275 SMART LRR_typ_2 646 669 IPR003591 -
Tsu03g00406 1275 Gene3D Ribonuclease Inhibitor 537 936 IPR032675 -
Tsu03g00406 1275 Gene3D - 330 420 IPR042197 -
Tsu03g00406 1275 Gene3D Ribonuclease Inhibitor 937 1115 IPR032675 -
Tsu03g00406 1275 PANTHER - 51 981 - -
Tsu03g00406 1275 SUPERFAMILY L domain-like 956 1260 - -
Tsu03g00406 1275 Pfam Rx N-terminal domain 15 101 IPR041118 -
Tsu03g00406 1275 Gene3D - 421 503 IPR036388 -
Tsu03g00406 1275 Gene3D Ribonuclease Inhibitor 1116 1264 IPR032675 -
Tsu03g00406 1275 SUPERFAMILY L domain-like 494 921 - -
Tsu03g00406 1275 PRINTS Disease resistance protein signature 197 212 - -
Tsu03g00406 1275 PRINTS Disease resistance protein signature 270 284 - -
Tsu03g00406 1275 PRINTS Disease resistance protein signature 369 383 - -
Tsu03g00406 1275 PRINTS Disease resistance protein signature 620 636 - -
Tsu03g00406 1275 PANTHER DISEASE RESISTANCE PROTEIN RP 51 981 IPR044974 GO:0006952
Tsu03g00406 1275 Pfam NB-ARC domain 191 397 IPR002182 GO:0043531
Tsu03g00406 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 430 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00406 Tsu-Chr3 3471387 3475214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00406 586 684 WRKY Transcription Factor Family AT4G12020 38.835 1.86e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00406 - - mtr:MTR_3g032370 1447.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00406 03 3471387 3475214 Tsu03g00406 03 3471387 3475214 ECH