Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00400 ATGGCAGCAACAACATTGGTAGGAAGCGCTTTTCTCACTGCAACCATTGAATCCTTATTACACAAACTCGCCTCATCAGAGTTCATTGATTACATCAAATGCAGCAAGCTAAATCTCTTAAAACTCACAGTATTCGAAACATCACTTCTCACTCTTCATTCAGTTCTTCACGATGCAGAACAGAAGCAGTTCTTTGATCCTAAAGTCAAACAATGGATGTATGAATTATACGACGCAATCTCAGTTGCAGATAATTTAATCGATGAAATCGGTTATGATTCCCTGCAATGCAAGGTGGAGAATACTCAACCTGATCACGATTTTACATTCAATTATCGGTTGATGTTAATGTGTCTAAGACTGCAACATTTTGTTCAACAAATCGATATCATTGGTTTGCAATCTGTAAGTGTTAGGGTTTCTTATAGAATGTGTTCAAATTCAGATTCTGTTATAATTGGTAGGACGAATGATAAAGAGATATTGATGAATATGTTGTTGTCTGGTAGTGAAACTAGCTGGAATTATAACAATATAGGTGTGATTGCTGTTTTAGGTGTAGGAGGTGTTGGTAAAACGACACTGGCTCGACTTGTTTATAATGACAGGGATATTAAAGAACGTTTTGATTTGAAAGTATGGGTTCGCGTATCAGAGAAATTTGATATTGTGAGAGTAATCAAAGTTCTCCTTGCATCTGTATGTCCACTAACTCACTACGTGGGTAATCACGATCTTGATTTTCTTCGACTTGAATTAAAGCAATTGCTGAGCTGTAGAagatttttgtttgtgttggaTGACGTATGGAATGTTGGTTATAATGATTGGCATGAGTTAGTAACTCCCTTATTTAATGGACAATCTGGTAGCAGGGTGATCATCACAACGCGCCAAGAAAGTGTTGCTAAGGTAGCTCATACATTTCCTATTCATAAATTAGAACCTTTATCATATGAAGATTGTTGGTCTTTACTCTCCAAACATGCATTTGAAAGTGAAGATTATCGTAGCAATATATACCCAAATCTAGAAGCTATTGGCAGGAAAATTGTAAGAAAGTGTCGAGGATTGCCATTAGCTGCCAAAACACTCGGAGGACTTTTGTCTTCAAAGATAGATGCAAAGGAGTGGATTGCAATTTTGATCAACAATCTATGGAACATACCAGATGATAATATTCTTCCATCTTTGCTTCTGAGTTATCAACATCTTCCCTCGCATTTGAAAAGATGTTTTGCCTACTGCTCAATTTTTCCGAAGGGTTATCCCTTTGATAGGAAgcaattgattttgttgtggaTGGCAGAAGGCTTCCTTGAACATTCCCAAGGTGAAAAGACAGCAGAAGAAGTAGGCGATGACTACTTTGTTGAATTGTTATCGAGATCCTTCATTCAAGAATTGCACGATGGCATTGAGAGAAAAAAGTTTGTTAGACACGACCTTGTTAAGAGAAATAAGTTTGTTGTACATGACCTTCTCTATGATTTAGCCGTGGTTGTATCTGGGAAAAGTTGTTGCGGATTTGAATGTGGTGGCAGTATCTCTAAAAATGTTCACCATTTGTCATATATTCAAGAGCAGTATGATACTTTCAAGAAGTTTGAAGTTTTCTATGACTATGAATGCTTGCGAAGCTTCTTTCCTATTTATGATACGCTAAGACTAAATTACTTATCTAGAAAGGTGGTTGGTGATTTGCTACCCACACTTAGAAGTTTGCGTGTGCTATCCTTATCACATTATAAAAACTTCACCGTGTTACCAGATTCAATTTATAACTTGTTGCATTTGCGGTATCTTGATCTCTCCTACACTCAAATCAAGAGCTTGCCTGATTCAACATGTGAACTTTACTATTTGCAAACCTTGAAGTTATCGTTGTGCTCGGCGCTCACTGAATTGCCGACAAATATTGGAAAGTTAATTAACTTACGCCACCTTAATCTCAGTCGGACAAACATTAGCAAGATGCCAATGCAAATTGTTGAACTGAAAAACCTTCAAACTCTTACTGTTTTTGTAGTTGGCAACCATGAAATTGGATTAAGTGTGAGTGAGCTTGGGAAGTTTCCTAATCTGCGAGGAAAACTTTGCATCCGGAACCTGCATAATGTCATTGATGTCAATGAAGCGTGTCATGCGAACTTGAAGAGCAAAGAACACCTCGAGAAGTTGGAGCTATATTGGGACAAAAACTTTGAAGATTCACCAAGAGACAAAGATGTTCTTGATGCGTTGCAACCATCATCACCAAGAGACAAAGATGTTCTTGATGCGTTGCAACCATCATCAATAAACTTGAAGAAATTGACCATTGGCAGTTATGGCGGGACAAGCTTCCCAAGTTGGTTGGGagattcttctttttctaaCATGGTGTACTTGTGCATAGGTTTCTGTGACTATTGTGTGGCACTTCCACCACTAGGGCAACTACCTTCTCTCAAGGATCTAAGTATAAAAGGCATGTCAATATTGGAGACAATTGGCCCAGAGTTCTATGGCTTGTTAGGAGGAGGTTCTAATTCTCCATTCCAACCATTTCCATCCCTTGAGCATCTAGAATTTTCCTTCATGTGTAATTGGAAGGAATGGCTTCCCTTTGGAGGCAGCAAATTTCCTTTTCCCCGACTTAAAACTCTGAAGTTAGAAAATTGTCAAGAACTAAGGGGGCATTTGCCTTGTCATCTTTCTTCCATTGAAGAGATTACAATAATTGGTTGTGATCGTCTGCTGGCAACACCGCCTACTATGCATGTGCTCTCCTCTGTAAAATCTTTAATGGTGCATTCTCGGGCGTCTGAATGGGCGTTGTTTGAAAGCGATTCTGCATGTCTTTTGCAGCGTGTAGAAATAAGGAACTTTCAGATGATGTTTTCTCTACCTAAAATGTTTATGAGCACCACTTGTCTTCAACACTTGGAACTCTATTGTATTCCATCTCTCACTGCATTTCCGGATGAAGGTCTACCCACTTCTTTGCAATCACTCCTTATTGATGACTGTGAGAATTTAGCATTCTTGCCACCTGAAACATGGAGCAAGTACACATCTCTTGTGAGTTTGGAGTTATGGCATTCCTGTGATGCACTTACCTCCTTCCCACTGAATGGTTTCCCTGTGCTCCAAAGGCTTTCCATTCATGATTGTGGGAATTTGCAATGCTTTTTTATTTCAGAAATTTCTTCCCATTTCCCGTTAACTCTCCAGTCACTTAGGGTCTCTAACTGTGATGCACTTAGATCACTTCCTCAACAGATGGACACCCTCACTGCTCTTGAAATCTTGAGTCTCGAATTTAAATTATTGCCATGCTATGAAGGATCTCGCCTCCCTCCCAAATTACGATTAATTTACATTGAACCATTGAGAACAACACCACCTGTGACTGGATGGGGTATTCATAATCTTAATGCACTATCTGATTTGCATATTGGAGGTGATGGTATTGTTAACACCTTGCTGAAGGAGCAATTGCTGCCGATTTCTCTTGTGTCTTTGATAATATATCTCCCCAAAAGGAAATCCTTACCAGGAAATGGGCTTCAACACCTCTCCTCTCTGGAAAGTCTTAGAATTAAGTGTTGTTCAAGGCTTAAATCATTGCCGGAAGACATGTTGCCTTCCTCTCTGAAATCCCTTGTAATTGTAAGTTGCCCAAAACTGATGTCTTTGCCGAATAGGTTGCCTTCCTCTCTGGAAATATTGGAGCTTGAGGATTGTCGAAGACTTGGGTCACTACCAAAAGACGGACTCCCTTCTTCTCTTAAGCGACTGGGAATTAGTGAGTGCCGTCTGTTAAAAGCAAGGGAAGGAAGAATTGCAATCCCATTTCAGACAATTAAGGCACAATAA 3861 0.3885 MAATTLVGSAFLTATIESLLHKLASSEFIDYIKCSKLNLLKLTVFETSLLTLHSVLHDAEQKQFFDPKVKQWMYELYDAISVADNLIDEIGYDSLQCKVENTQPDHDFTFNYRLMLMCLRLQHFVQQIDIIGLQSVSVRVSYRMCSNSDSVIIGRTNDKEILMNMLLSGSETSWNYNNIGVIAVLGVGGVGKTTLARLVYNDRDIKERFDLKVWVRVSEKFDIVRVIKVLLASVCPLTHYVGNHDLDFLRLELKQLLSCRRFLFVLDDVWNVGYNDWHELVTPLFNGQSGSRVIITTRQESVAKVAHTFPIHKLEPLSYEDCWSLLSKHAFESEDYRSNIYPNLEAIGRKIVRKCRGLPLAAKTLGGLLSSKIDAKEWIAILINNLWNIPDDNILPSLLLSYQHLPSHLKRCFAYCSIFPKGYPFDRKQLILLWMAEGFLEHSQGEKTAEEVGDDYFVELLSRSFIQELHDGIERKKFVRHDLVKRNKFVVHDLLYDLAVVVSGKSCCGFECGGSISKNVHHLSYIQEQYDTFKKFEVFYDYECLRSFFPIYDTLRLNYLSRKVVGDLLPTLRSLRVLSLSHYKNFTVLPDSIYNLLHLRYLDLSYTQIKSLPDSTCELYYLQTLKLSLCSALTELPTNIGKLINLRHLNLSRTNISKMPMQIVELKNLQTLTVFVVGNHEIGLSVSELGKFPNLRGKLCIRNLHNVIDVNEACHANLKSKEHLEKLELYWDKNFEDSPRDKDVLDALQPSSPRDKDVLDALQPSSINLKKLTIGSYGGTSFPSWLGDSSFSNMVYLCIGFCDYCVALPPLGQLPSLKDLSIKGMSILETIGPEFYGLLGGGSNSPFQPFPSLEHLEFSFMCNWKEWLPFGGSKFPFPRLKTLKLENCQELRGHLPCHLSSIEEITIIGCDRLLATPPTMHVLSSVKSLMVHSRASEWALFESDSACLLQRVEIRNFQMMFSLPKMFMSTTCLQHLELYCIPSLTAFPDEGLPTSLQSLLIDDCENLAFLPPETWSKYTSLVSLELWHSCDALTSFPLNGFPVLQRLSIHDCGNLQCFFISEISSHFPLTLQSLRVSNCDALRSLPQQMDTLTALEILSLEFKLLPCYEGSRLPPKLRLIYIEPLRTTPPVTGWGIHNLNALSDLHIGGDGIVNTLLKEQLLPISLVSLIIYLPKRKSLPGNGLQHLSSLESLRIKCCSRLKSLPEDMLPSSLKSLVIVSCPKLMSLPNRLPSSLEILELEDCRRLGSLPKDGLPSSLKRLGISECRLLKAREGRIAIPFQTIKAQ 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00400 1286 Gene3D - 402 500 IPR036388 -
Tsu03g00400 1286 PANTHER DISEASE RESISTANCE PROTEIN RP 50 981 IPR044974 GO:0006952
Tsu03g00400 1286 SUPERFAMILY L domain-like 949 1057 - -
Tsu03g00400 1286 Pfam NB-ARC domain 177 381 IPR002182 GO:0043531
Tsu03g00400 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 416 IPR027417 -
Tsu03g00400 1286 SUPERFAMILY L domain-like 491 932 - -
Tsu03g00400 1286 Pfam Rx N-terminal domain 44 103 IPR041118 -
Tsu03g00400 1286 Gene3D - 317 401 IPR042197 -
Tsu03g00400 1286 ProSiteProfiles Leucine-rich repeat profile. 598 619 IPR001611 GO:0005515
Tsu03g00400 1286 SMART LRR_typ_2 596 619 IPR003591 -
Tsu03g00400 1286 SMART LRR_typ_2 643 666 IPR003591 -
Tsu03g00400 1286 Gene3D - 137 309 IPR027417 -
Tsu03g00400 1286 Gene3D Ribonuclease Inhibitor 1111 1275 IPR032675 -
Tsu03g00400 1286 Gene3D Ribonuclease Inhibitor 947 1110 IPR032675 -
Tsu03g00400 1286 PANTHER - 50 981 - -
Tsu03g00400 1286 Gene3D - 16 126 - -
Tsu03g00400 1286 Gene3D Ribonuclease Inhibitor 548 942 IPR032675 -
Tsu03g00400 1286 SUPERFAMILY L domain-like 1034 1268 - -
Tsu03g00400 1286 PRINTS Disease resistance protein signature 181 196 - -
Tsu03g00400 1286 PRINTS Disease resistance protein signature 570 586 - -
Tsu03g00400 1286 PRINTS Disease resistance protein signature 355 369 - -
Tsu03g00400 1286 PRINTS Disease resistance protein signature 256 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00400 Tsu-Chr3 3418153 3423818 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00400 178 696 WRKY Transcription Factor Family AT5G45050 22.735 1.24e-10 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00400 - - mtr:MTR_3g032370 1283.47