Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00399 ATGGACGCAACAACATCGGTGGCAAGTGCATTTCTCTCTGCAACCGTTGAATCCTTATTGCAGAAACTCGCTTCATCAGAACTCATCGATTACGTCAAATACAGCCATTTGAATATCTTAAAATTCACTGTCTTGGAAACAAAGCTTCTCACTCTTCACTCAGTTCTTTACGATGCTGAACACAAGCAATTTTTCAATCCTGAAGTTAAACAGTGGCTTGATGGATTGTACAATGTAATCTCTACTGCTGAAGATTTGTTCAATGAAATCGGTTACAGTTACCTTCAATGTAAGGTTGAGAATACTCAATCTCAACATGATTTTGAGTATAATTCCGAAATTGCGATGATTTGTCAAAAGCTGCAAGGTTTTGTTGAACAGATAGAGATCCTTGGTTTGCAATCTGTAAGTGTTAGGGTTTCTGTTAAAATGTGTTCAAATTCAGTGAGAAATGATGAAACTGTTGTAATTGGTAGGAAGGATGATAAAGAGAAATTGATGAATATGTTGATGTCTGAGAgtgttaataataatagtaacaacaatTTAGGTGTGGTTGCTGTTTTTGGTGTTGAAGGTGTTGGTAAATCGACACTTGCTCGACTTGTTTATAACGATGAAAAAGTTAAAGAGCATTTTGATTTGAAAGCATGGGTTCGTATGTCAGAGGATTTTGATGTTGTGAGAGTAACTAAAACACTTACTGAATCTGTCACTACAGAGAGGTATGCGATTGATGATGTGGATTTTATGCATGCCAAATTAAAGAAAGGGGTGAGTGGTAGAAGATTCTTGATTGTGTTGGATGGGCTATACAATTACAGTTATAATTATTGGCATGGGATAGTGACTCCTTTGATTAAAGGAAATTATGGAAGTAGAGTGATCGTCACAACGCGCTATGAAGAAGTTGCAAAGGTCGCCCATACTTTTCCTATTCATAAGTTAGATCCTTTGTCAGAAGAAGATTGTTGGTCTTTACTCTCCAAGCATGTTTTTGAAAGTGGTGGTGGCAATGAATTCCCAAATTTAGAAGCAATTGGTAGGAATATTGCAAGAAAATGTGGTGGATTGCCAATAGCTGCTAAAATAGTTGGAAGACTTTTAAGCTCAAAGATAGATGAACAGGAGTGGATTGAAATCATGAACAACAACATATGGAACTTATCAAaggataatattttaccttctTTGCTTCTGAGTTATCAATATCTTCCCTCTTATTTGAAAAGATGTTTTGCTTATTGGTCAATTTTTCCAAAGGGTTATCCCATTGATAGAAAGCAAATGGTTTTGCTGTGGATGGCACAAGGCTTCCTTGAACATTCTATGGTTGAAAAAGCAGAAGAGGATGTAGGTAATGAGTACTTTAATGAGTTGTTGTCAAGATCCTTAGTTGAACAATTGAATGATGATACTGATAGAGAAAAGTTTGTCATGCATTGCGTTGTACATGATCTAGCAACAATTGTATCTGGTAAAAGTTTTAACAAGCTTGAATCTGGTGGTGGTAGAATTCACCATTTTTTGTATCATCAAGAAGAGTATGACCTCTACAAGAAGTTtgaaattgttgatgatttcgAATGCTTGCGAAGCTTCCTATCCATTGATGTCTGGTGGAGAATGAATTACATATCCAGCAAGGTGCTTCGTGTATTGCTACCCTCACACGGAAGGCTACGTGCTTTATCGATATCACATTATTCTAACATCACCACGCTGCCGGATTCACTTTGCAGTTTGGTGCAGTTGCGGTATCTAAATCTCTCATGCACTGGAATCAAATACTTGCCTGATACAATCTGTGACCTTTACTATTTGCAAACCTTGAATTTATCAGGGTGCAGAAAACTCATTGAATTGCCAGTACATGTTgggaatttaattaatttacgTCACCTTGATATCAGTGGTACAAATATAAAGCAGATGCCGATGCAACTTGTTGAACTAGAAAATCTTCAAACTCTCACTGTTTTTGTAGTGAGCGAGCAAGAAGTTGGGTTAAGTGTCAGAGAGCTTTCAAAGTTTCCTAATCTTAGGGGAAAACTTCACATTCAGAACCTGCATAAAGTCATTGATGTTAGTGAAGTGGGTGATACCAAATTGAAGAGCAAAGAACACATTGAGGAGTTATCTTTATATTGGGATAAACAAACTGAAGATTCACCATCAAAGGAAGTTATTCTTGATGAGTTACAACCATCGACAAACTTGAAGAAATTGAGCATTGGCTTCTATGGTGGAACAAGCTTTCCAAGTTGGTTGGGAGATTGTTCGTTTTCTAAAATGGTATTCCTTTACATCAAATCTTGTGAGTATTGCACAACACTTCCTCCATTAGGGCAACTACCTTCTCTCAAAGAACTTGAGATTGATGGTATGAGCAGAGTGGAAACAATTGGCCCAGAATTCTATGGCGTGATAGGAGGAAGTACTAATTCCTCATTCCAACCATTTCCATCTCTCGAGAAGCTACATTTTCAGAGGATGTCTAATTGGAAAGAATGGCTTTCCTTCGGAGGCAGCAAGTTTCCTTTTCCTCGGCTTAAAACTTTGCGTTTAAATGACTGTTCAGAACTGAGGGGACATTTGCCTAGTCATCTTCCTTCCATAGAGAAAATTACAATGTTTTGGTGTGACCGTTTGTTGGCTACACCATCTACTCTCCATTGGCTCTCCTCGGTAAAATCTTTAAGTTTGTTGTCTCGAGGGTCCACTGAATTGTCGTTGCTACAAAGTGATTCTCCATGTCTTCTGCAGACTGCGGAAATATTTAACTTTAACACACTGCTGTCTCTGCCTAAAATGTTTCTGAGCTCTACTTGTCTTCAACACTTGCATCTCTGTTATATTTCCTCTCTCACTGCCTTTCCATCTAATGGTCTTCCCACTTCATTGAAGTCACTTGATATTGCTGAGTGTAAGAATTTAGCATTCTTGCCTCCTGAAACTTGGAGCAATTACACATCACTTGTGACTTTGGACTTAAAAGATTGCTGTGACTGA 3012 0.3708 MDATTSVASAFLSATVESLLQKLASSELIDYVKYSHLNILKFTVLETKLLTLHSVLYDAEHKQFFNPEVKQWLDGLYNVISTAEDLFNEIGYSYLQCKVENTQSQHDFEYNSEIAMICQKLQGFVEQIEILGLQSVSVRVSVKMCSNSVRNDETVVIGRKDDKEKLMNMLMSESVNNNSNNNLGVVAVFGVEGVGKSTLARLVYNDEKVKEHFDLKAWVRMSEDFDVVRVTKTLTESVTTERYAIDDVDFMHAKLKKGVSGRRFLIVLDGLYNYSYNYWHGIVTPLIKGNYGSRVIVTTRYEEVAKVAHTFPIHKLDPLSEEDCWSLLSKHVFESGGGNEFPNLEAIGRNIARKCGGLPIAAKIVGRLLSSKIDEQEWIEIMNNNIWNLSKDNILPSLLLSYQYLPSYLKRCFAYWSIFPKGYPIDRKQMVLLWMAQGFLEHSMVEKAEEDVGNEYFNELLSRSLVEQLNDDTDREKFVMHCVVHDLATIVSGKSFNKLESGGGRIHHFLYHQEEYDLYKKFEIVDDFECLRSFLSIDVWWRMNYISSKVLRVLLPSHGRLRALSISHYSNITTLPDSLCSLVQLRYLNLSCTGIKYLPDTICDLYYLQTLNLSGCRKLIELPVHVGNLINLRHLDISGTNIKQMPMQLVELENLQTLTVFVVSEQEVGLSVRELSKFPNLRGKLHIQNLHKVIDVSEVGDTKLKSKEHIEELSLYWDKQTEDSPSKEVILDELQPSTNLKKLSIGFYGGTSFPSWLGDCSFSKMVFLYIKSCEYCTTLPPLGQLPSLKELEIDGMSRVETIGPEFYGVIGGSTNSSFQPFPSLEKLHFQRMSNWKEWLSFGGSKFPFPRLKTLRLNDCSELRGHLPSHLPSIEKITMFWCDRLLATPSTLHWLSSVKSLSLLSRGSTELSLLQSDSPCLLQTAEIFNFNTLLSLPKMFLSSTCLQHLHLCYISSLTAFPSNGLPTSLKSLDIAECKNLAFLPPETWSNYTSLVTLDLKDCCD 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00399 1003 Gene3D Ribonuclease Inhibitor 704 902 IPR032675 -
Tsu03g00399 1003 Gene3D Ribonuclease Inhibitor 546 703 IPR032675 -
Tsu03g00399 1003 PANTHER DISEASE RESISTANCE PROTEIN RP 49 985 IPR044974 GO:0006952
Tsu03g00399 1003 Pfam NB-ARC domain 161 384 IPR002182 GO:0043531
Tsu03g00399 1003 Gene3D - 318 401 IPR042197 -
Tsu03g00399 1003 PANTHER - 49 985 - -
Tsu03g00399 1003 Gene3D Ribonuclease Inhibitor 920 1002 IPR032675 -
Tsu03g00399 1003 SUPERFAMILY L domain-like 480 903 - -
Tsu03g00399 1003 PRINTS Disease resistance protein signature 258 272 - -
Tsu03g00399 1003 PRINTS Disease resistance protein signature 185 200 - -
Tsu03g00399 1003 PRINTS Disease resistance protein signature 355 369 - -
Tsu03g00399 1003 PRINTS Disease resistance protein signature 603 619 - -
Tsu03g00399 1003 Gene3D - 402 490 IPR036388 -
Tsu03g00399 1003 Pfam Rx N-terminal domain 15 105 IPR041118 -
Tsu03g00399 1003 Gene3D - 137 311 IPR027417 -
Tsu03g00399 1003 SUPERFAMILY L domain-like 848 1001 - -
Tsu03g00399 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 415 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00399 Tsu-Chr3 3412827 3415890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00399 572 666 WRKY Transcription Factor Family AT4G12020 39.583 3.45e-07 52.8