Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00395 ATGGCTGCAACTTTGGTTGGAGGTGCATTTCTCTCTGCAACTGTCAAAACCATGATTGACAAGCTAATTTCAACCGAGTTTCGCGATTACATCAACAACAAGAAGCTGAATGTCTCACTCTTGAAACAGTTACAAACAACACTGCTGATTCTTCAGGCTGTTTTGGATGATGCAGAGGAGAAGCAGATCAACAATCCTGCTGTCAAACAATGGCTTGATGACTTGAAGGATGCTATCTTTGATGCTGAAGATTTGCTGAATGAAATCAGTTATGATTCCCTGCGATGCAAGGTGGAGAATACTGAAGCTGCAAACAAAACTAATCAGATCATGTGTGAAACCCTGCAACTTTTTGCACATCATAAAGATATCCTTGGTTTGCAAACTAAAAGTGCTAGAGTTTTTCATAGAACGCCTTCAACTTCGGTGGTAAATGAATCTGTCATGGTAGGTAGGAAGGATGATAAAGAGACAATAATGAACATGTTGCTATCAGACAGCGGCACTAGCAATAACAAAATAGGCGTTGTTGCAATTTTAGGCATGGGAGGTGTCGGTAAAACGACCCTTGCACAACTTGTTTACAATGATAAGGAAGTTCAAGAGCATTTTGATCTAAAAGCATGGGCTTGTGTGTCAGAGGATTTCAATACTTTGAGAGTAACCAAAAGTCTCCTCGAATCTATCACTTCAAGAGCTTGGGATAGCAATAATCTGGACATTCTTCGAGTCGAATTAAGGAAAAATTTGATGGGCAAAcgatttttatttgtgttggaTGACCTAtggaatgacaattataatGATTGGGATGAACTGGTAACTCCCTTGATTAACGAGGAAGCTGGAAGTAGGGTGATCATAACAACCCGCCAACAAAAAGTTGCAGATGTTGCAATTACAAATCCTATTTGTAAATTTGAACCTTTATCAGCTGAAGATTGTTGGTCTTTACTCTCAAAGCATGCATTTGGAAGTGAAGACTTTTGTGGTGGTAAATATCGAGATCTAGAAGCAATTGGAAGGAAGATATCAAGAAAGTGCGGTGGATTGCCAATAGCTGCCAAAACTTGTAAGAGCCTGGAATCCATTTTTATTTCGGAAACTTCTTCCCATCACCCATCAATGCTTCAAAAACTTTCACTCATCAGATGTGAGGCACTTATATCACTACCTCGACGGATGGAAACCCTCACAACTCTTGAACAGTTGAGTATCTCTCACTGTGATGCGCTTAGATCACTTCCTGGACTGGACACCCTCACCTCTCTTAAGCGTTTGTCTCTCGGGGGTCCTCAAGAGCTAATGTTATCATTTAGTGAAGGACCTTGCCTACCTTCCAATTTGCAATCAATTTATATTGAATCTACGAGGATAACAATGCCACGCATGACTGAATGGGGTCTCCAACGCCTCAATACTCTTTAA 1428 0.3971 MAATLVGGAFLSATVKTMIDKLISTEFRDYINNKKLNVSLLKQLQTTLLILQAVLDDAEEKQINNPAVKQWLDDLKDAIFDAEDLLNEISYDSLRCKVENTEAANKTNQIMCETLQLFAHHKDILGLQTKSARVFHRTPSTSVVNESVMVGRKDDKETIMNMLLSDSGTSNNKIGVVAILGMGGVGKTTLAQLVYNDKEVQEHFDLKAWACVSEDFNTLRVTKSLLESITSRAWDSNNLDILRVELRKNLMGKRFLFVLDDLWNDNYNDWDELVTPLINEEAGSRVIITTRQQKVADVAITNPICKFEPLSAEDCWSLLSKHAFGSEDFCGGKYRDLEAIGRKISRKCGGLPIAAKTCKSLESIFISETSSHHPSMLQKLSLIRCEALISLPRRMETLTTLEQLSISHCDALRSLPGLDTLTSLKRLSLGGPQELMLSFSEGPCLPSNLQSIYIESTRITMPRMTEWGLQRLNTL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00395 475 Pfam NB-ARC domain 153 362 IPR002182 GO:0043531
Tsu03g00395 475 Pfam Rx N-terminal domain 14 100 IPR041118 -
Tsu03g00395 475 Coils Coil 41 61 - -
Tsu03g00395 475 PANTHER - 54 357 - -
Tsu03g00395 475 PRINTS Disease resistance protein signature 348 362 - -
Tsu03g00395 475 PRINTS Disease resistance protein signature 176 191 - -
Tsu03g00395 475 PRINTS Disease resistance protein signature 249 263 - -
Tsu03g00395 475 Gene3D - 14 124 - -
Tsu03g00395 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 380 IPR027417 -
Tsu03g00395 475 PANTHER DISEASE RESISTANCE PROTEIN RP 54 357 IPR044974 GO:0006952
Tsu03g00395 475 Gene3D - 132 302 IPR027417 -
Tsu03g00395 475 Gene3D Ribonuclease Inhibitor 325 475 IPR032675 -
Tsu03g00395 475 SUPERFAMILY L domain-like 351 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00395 Tsu-Chr3 3380245 3381743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00395 149 310 WRKY Transcription Factor Family AT4G12020 26.816 1.91e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00395 - - mtr:MTR_3g035840 499.975