Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00393 ATGGCATCCGAATCATCTAGCACTGCCACTTCACAAAATCAAGGTGATTCTTCCATCACAAAAAAAGTGAGGAACATGAAGGACAATGAACATGATCAATCCTCGGGCTCCGATTCCAATAAGTTGATTGATTTCGTGAAGCTATTGAAAGATGATTTGGTTTGTGGGTCGAAGGTACAAGAGTACGACTTTTTTAGCCCTATTCAAAATGGTTCATCATCTTGTTTTCCTAATAACAACAATGAAGAGGGAAATGATGAGAACAACAATGAAGAGAAGAAATCAGAGTCAAAGTCTTTCTCATGCCACTTTTGTAAGAGACAATTTTCTACTTTACAAGCGCTAGGAGGACATCAAAATGCCCACAAGGCAGAACGTGCATTAGAAAAACAACGTAAACAAAGGTATAACGATGGTACTTTAGGTTTAGGGCTACCTCGCTTTAACCCTTATCATAGTTATCCGAGTACTCTTTTTCCACTTTATAATTATAGGGCACTTGGGATTAAAATGGAGTCAATGATTCGAAAACCAACTTATTTTAACCCTAGGATTACCCCACATAGTTTTGGGTATGGTTATGATGCTTTGCGTTTGCAGGAGACATTACACCCTTCTCTTGTTAGCATGAGGAATAATATTGAGGGTAGTAATAGTGGGGTTGGAATTCTAGGTATTGGTGGTGCAACTACATCAAGGATTGAAGATCgtgcaaataataaaattggtgCTATTCTAAAATTTGGAGATTCTTCTACAAACTCAAACTCTAATATTgacaagaaaaataaagtggCTTCTTCTTCTATCAAAGAAGAACTCTCCAATTTTGAATCTTCTCAGCTTGATTTATCACTTAAACtttaa 867 0.3529 MASESSSTATSQNQGDSSITKKVRNMKDNEHDQSSGSDSNKLIDFVKLLKDDLVCGSKVQEYDFFSPIQNGSSSCFPNNNNEEGNDENNNEEKKSESKSFSCHFCKRQFSTLQALGGHQNAHKAERALEKQRKQRYNDGTLGLGLPRFNPYHSYPSTLFPLYNYRALGIKMESMIRKPTYFNPRITPHSFGYGYDALRLQETLHPSLVSMRNNIEGSNSGVGILGIGGATTSRIEDRANNKIGAILKFGDSSTNSNSNIDKKNKVASSSIKEELSNFESSQLDLSLKL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00393 288 MobiDBLite consensus disorder prediction 1 41 - -
Tsu03g00393 288 SUPERFAMILY beta-beta-alpha zinc fingers 97 128 IPR036236 -
Tsu03g00393 288 MobiDBLite consensus disorder prediction 1 20 - -
Tsu03g00393 288 MobiDBLite consensus disorder prediction 73 93 - -
Tsu03g00393 288 MobiDBLite consensus disorder prediction 21 37 - -
Tsu03g00393 288 Pfam C2H2-type zinc finger 100 124 - -
Tsu03g00393 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Tsu03g00393 288 PANTHER ZINC FINGER PROTEIN JAGGED 71 288 IPR045320 GO:0003700
Tsu03g00393 288 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Tsu03g00393 288 Gene3D Classic Zinc Finger 83 140 - -
Tsu03g00393 288 PANTHER ZINC FINGER PROTEIN KNUCKLES 71 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00393 Tsu-Chr3 3367130 3367996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00393 98 288 C2H2 Transcription Factor Family AT5G27880 32.381 1.27e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00393 - - mtr:MTR_3g011970 306.605