Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00368 ATGGAAAGGAcgtcttcatcatcttcatcatcatcatcatccttcaATTTGAATTCTCATCAATGGATGTACGACGTGTTCATAAATTTCAGAGGGGAAGACACGCGTAAGAACTTGGTTTCTCATCTATATGCTGCTCTATCAAATGCCGGAATCAACACTTTTCTTGACGATGAAAAGCTTAAAAAGGGATGGGAAGTAGAACCAGAACTATTGCGAGCAATTCAAGGCATCTACAATAAAATTCATCGCAAATTTATCCATAGAAGTTTCATTGAGAATATTAGACAAACTTGCGAATCAGATAAAGGGTATATTCGTTTACAGCAACAACTTCTTTCAGATCTCTTCAAAACAAAGGAGAAGATACACAATGTTGCATCTGGGACAGCTATAATCAACAAAAGAATATCTGCAAAAAAGGTGCTCATTGTACTTGATGATGTGACAAAAGGAACACAAAAAGTTGAGGGATTGATTTGGAACTTGCAAAGTAAAGGCAGAGATAGCTTCAATACCAATGTTTTCCAGCAGATGAAGAACATGAGACTTTTGCAACTTGATTGTGTTGACCTCACTGGAGATTTTGGACATCTTTCCAAACAATTGAGATGGGTCAATTGGCAACGATCTACCTTCAACTGTATACCCAATGACTTTTATCTGGGCAATCTAGTTGTTCTCGAATTAAAACATAGCCATGTTAAACAAGTTTGGAAGGAAACCAAGTTGTTGGACAAGCTAAAAATACTGAACCTCAGTCATTCCAAGTACTTGAAAAGCACcccttacttttcaaaattaCCGAATCTAGAAGAGCTCATTATGAAGGATTGTCCAAGTTTGTCCGAGGTACACCCATCCATTGGAGTTCTCAAGAATCTTCTTCTGATAAATGTGAAGGACTGTACAAGTCTTGGCAATCTACCAAGGGAAATCTATCAATTGATATCTGTGAAAACACTCATTCTTGATGGTTGTTCAAAGATTGACAAATTGGAAGAAGATATAGTGCAAATGACATCCTTGACAACTTTAGTTGCAGCAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGTGTCAAACAAGCACCCTTTTCCATAG 1122 0.3422 MERTSSSSSSSSSSFNLNSHQWMYDVFINFRGEDTRKNLVSHLYAALSNAGINTFLDDEKLKKGWEVEPELLRAIQGIYNKIHRKFIHRSFIENIRQTCESDKGYIRLQQQLLSDLFKTKEKIHNVASGTAIINKRISAKKVLIVLDDVTKGTQKVEGLIWNLQSKGRDSFNTNVFQQMKNMRLLQLDCVDLTGDFGHLSKQLRWVNWQRSTFNCIPNDFYLGNLVVLELKHSHVKQVWKETKLLDKLKILNLSHSKYLKSTPYFSKLPNLEELIMKDCPSLSEVHPSIGVLKNLLLINVKDCTSLGNLPREIYQLISVKTLILDGCSKIDKLEEDIVQMTSLTTLVAANXXXXXXXXXXXXXXLVSNKHPFP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00368 373 Pfam TIR domain 24 77 IPR000157 GO:0007165
Tsu03g00368 373 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 76 154 - -
Tsu03g00368 373 ProSiteProfiles TIR domain profile. 22 179 IPR000157 GO:0007165
Tsu03g00368 373 Gene3D - 17 82 IPR035897 -
Tsu03g00368 373 SUPERFAMILY L domain-like 170 350 - -
Tsu03g00368 373 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 153 350 - -
Tsu03g00368 373 SMART till_3 23 146 IPR000157 GO:0007165
Tsu03g00368 373 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 153 350 IPR044974 GO:0006952
Tsu03g00368 373 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 71 IPR044974 GO:0006952
Tsu03g00368 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 161 IPR027417 -
Tsu03g00368 373 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 76 154 IPR044974 GO:0006952
Tsu03g00368 373 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 77 IPR035897 -
Tsu03g00368 373 Gene3D Ribonuclease Inhibitor 109 355 IPR032675 -
Tsu03g00368 373 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 27 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00368 Tsu-Chr3 3131377 3134449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00368 152 335 WRKY Transcription Factor Family AT4G12020 34.500 1.55e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00368 - - pvu:PHAVU_010G028600g 306.219