Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00356 ATGGCAGAGTTGGTTACTGGGgcatttctttcttctttctttcaagTGATTTTTGATAGGTTGGTTTCAAGTAATTTCACAGACTATTTTCGCAGAGGCAAACTTGACGAGTCGGTGGAAGAACTTAAGTCTACACTCGATTCTATCAACCAAGTGTTAGATGATGCTGAGATAAAGCAATACCAAATCCCAAACGTCAAGAAGTGGCTTTGCGATGTTAAACATGCTATGTACGAGGCTGATCAACTACTTGATGAGATTGCTACTGATGCACCACTCAAGAAGCTGAAGGCTGAATCTCAACCATCTACTAGCAATATTTTCAACTTCATTTCAACTTTTACTAATCCATTTGAATCCAGGATcaaagaattgataaagagccTGCATTCTCTTGCAGAGCAGAAGGATAAACTGCAATTGAAAAATCAAACGTATGCCGGTAATGTGGTTGGATTCAATTCGAAACCTTCAGAAAGGCCAACTACATATTTGGTGGATGCATCCGGAATATATGGCAGAGATGGTGATAAAGAAGAAATGATCAAAGTTTTACTTTCAGAGAATGGTGGTAGCAACCAGACACCTATAATCAGCATAGTTGGTTTAGGAGGGATGGGGAAAACCACCCTTGCTAAGCTTGTGTACAATGACAACAAGATAAAGGAGCATTTTGAACATACCAAAGCATGGGTCTATGTTTCAGACTCTTTTAATGTTGTTGGACTCACCAAAGCAATTCTCAAGTCATTTGGTTTTTCAGCAGATGGCGAAGACTTGAATCTACTTCAACATCAACTGCAGCACAAACTAACGGACAAAAAATACTTGCTTGTTTTAGACGATATCTGGAACGGGAAGGCAGAATGTTGGGAGCAGTTACTACTTCCGTTTAACCATGGAAGTTCTGGAAGTAAGATTATTGTGACAACACGTGACAAGGGGGTAGCGGATGTCCTGAATTCAAAGTTATTTGATTTACAACAATTGGACAAAAATGATTGTTGGAGTTTATTTGTGACACATGCGTTTCGTGACAAAAAATTGTGTGAATATCCAAATCTTGAATCAATTGGCAAGAAAATAGTGGACAAGTGTGGAGGGTTGCCTTTAGCTGTAAAAACATTGGGCCAACTCTTGCGAAGAAAATTCTTTGATCATGAATGGAGGAAGATATTAGAAACTGATATGTGGCAATTTTCAGATGAGGACAACAACATTAACCCAGTGCTGAGATTGAGTTACCATAATCTCCCATCTAATCGGAAGCGCTGTTTTGCTTATTGTTCTATATTTCCAAAAGGTTATGAGTTTGACAGAGGTGAATTAATCAGGTTTTGGATGGCAGAAGGTTTGTTGAAGGGTTGCAAAGCATACAAAAGTGAAGAAGAGTTCGGTAGTGAAATTTTCAGCGATCTTGAGtcaatttcatttttccaaAAATCATTGAATTACAGATTTGCCATGCATGATCTTGTCAATGATTTGGCAAAATCAGTATCAGGAGAATTTGGTAAGAAAATGGATGGTGCTTGGGTGGAAGGTAACCTTGAAAGGACACGTCACGTTTGGTGCTCTCTTCGATTAAATTGTGTTGATAAATTACTAGGGCCAAAATGTGAAGTTAAGGGACTACGTAGTCTAATACTAAGACACAATACTATGTTGATAAGCAACAATGTGCAACGTGATCTATTTTCAAGACTAACATGTTTGCGGATGTTATCCTTTAGAGGTTGTTGTCTCTCAGAGCTAGATGATGAGATAggcaatttaaaacttttgcgTTATCTAGACCTTTCTTACAATAGCTTTACAGCCTTACCTGATACCATATGTAAATTGTATAATTTGCAAACACTCTTGTTGAAAGGGTTTAATAAATTGACAGAGCTCCCTTCAAATTTTTCCAAGCTCATCAATTTACGTCATCTTGAACTCCCTTTTGGTTTAAAGAAGATGCCAAAGAATATAGGAAATCTAATCAATCTTCAaacattgaattattttattgtggAAGAGCAGAACGGGTCTGGTATTAAAGAATTGGCAAAAATGAACAATCTTCATGGAACAATTAAAATTACAGGGTTGGGTAATGTCATTGATCATGAAGATGCTGCAAAAGCTAATTTGAAAGATAAGAAGTACTTAGAAGAATTATATATGGTATTTGATGGCAGAAGAGAAGAAATGAATGACCCAATGGTTGAAAGCATTGTGTCTGTGTTGGAGGCTCTTGAACCAAATTGCAACTTGAAGAAACTCACCATTGAAAACTACAATGGCAACCGCTTTCCAAATTGGCTAATGGATAGTCATTTACCCAACTTAGTATCTCTTGAACTGAAGAACTGTGGACTATGTTCTGATTTGCCGTCACTTGATCAACTTCCTTTGCTGAAAAAGCTTTATATAAGAGAATGTCCCAAATTGAAGGCATCAATTCCAAAGGGTGATAGTATGATAGAGTTACATCTTGAGAAATGTGATCGGATTTTGGTAAATGGATTGTCGTCTAGGTTGAAAAAGTTTGTCCTTTCGGAAAATCGGTATACCGAGTTCTCCATGGAGCAAAATTTAGTAAACTGTATGATTCTTGAGGAGTTGGATTTGGATGTAAGAGGCTTTGTAAATTGTCCCTCTTTAGATCTGAGTTGCTATAATTCTCTTCGTGATCTTTCAATAAGAGGATGGCACTTCTCCTCCTCCTTGCCTTTTTCACTACATCTCTTCACCAATCTTCGTACTCTCAAGTTGTACGATTGCCCACAGTTGGAATCATTTGGAAGGGGAGGTTTGCCTTCCAACTTGATCTATCTTAAAATAGAGAATTGCCCAAAACTGATTGGTTCGAGAGAAGAGTGGGGTTTGTTCCAACTCAATTCTTTGCAAACATTCATAATTAGTGATGAGTTTGAAAACGTGGAGTCATTCCCAGAGGAGAATCTGCTGCCACCAACTCTTTATGAACTTTATTTGATAGAATGTTCAAAGCTAAGAATAATGAACTACAAGGGTTTTCTCCACCTCAATTCTCTCTACCGTCTATATATTTGGGACTGCCCTAGTCTTGAGAGCTTGCCAGAGGAGGGTCTACCCAGCTCCCGTTCTAATTTGTTGATTGAAGAATGTCCAATAATAAGGGAGAACACGACCACGAATGAGATGTGGCCCCAGGCAGAAATAAAACAGGCAGATAGCTTGGATCAACCAATTACCGCTCTCGTCCAACTTGAAGCCTTGCAGGTCCCTCATTTGAATAGGGTGCTGAATGAGAATAGGAATAAAATCTCAGTagatgatgataaaaaaaaactcaaagtTCAAAGAGGGCAAAGACCAAGAAATGAGTCAAAGGAACAATGGGCGTCTGTGTTCTGGTTCCTTGGAGGTTTTGAAGTTGTTGCTTTTTTTGCATCATCTTCGATTTTCCGGTGTTCACCTGAACCAAGATCCCAAGAGTGCACAGCCTCGCTTCAATTTATTCAAATTTCAGTTTGTGTTTCTCTGGCAAAAAATCTCAGTTTATTTGTTCTCACACTTTCAGTGAGCCTCTGA 3561 0.3726 MAELVTGAFLSSFFQVIFDRLVSSNFTDYFRRGKLDESVEELKSTLDSINQVLDDAEIKQYQIPNVKKWLCDVKHAMYEADQLLDEIATDAPLKKLKAESQPSTSNIFNFISTFTNPFESRIKELIKSLHSLAEQKDKLQLKNQTYAGNVVGFNSKPSERPTTYLVDASGIYGRDGDKEEMIKVLLSENGGSNQTPIISIVGLGGMGKTTLAKLVYNDNKIKEHFEHTKAWVYVSDSFNVVGLTKAILKSFGFSADGEDLNLLQHQLQHKLTDKKYLLVLDDIWNGKAECWEQLLLPFNHGSSGSKIIVTTRDKGVADVLNSKLFDLQQLDKNDCWSLFVTHAFRDKKLCEYPNLESIGKKIVDKCGGLPLAVKTLGQLLRRKFFDHEWRKILETDMWQFSDEDNNINPVLRLSYHNLPSNRKRCFAYCSIFPKGYEFDRGELIRFWMAEGLLKGCKAYKSEEEFGSEIFSDLESISFFQKSLNYRFAMHDLVNDLAKSVSGEFGKKMDGAWVEGNLERTRHVWCSLRLNCVDKLLGPKCEVKGLRSLILRHNTMLISNNVQRDLFSRLTCLRMLSFRGCCLSELDDEIGNLKLLRYLDLSYNSFTALPDTICKLYNLQTLLLKGFNKLTELPSNFSKLINLRHLELPFGLKKMPKNIGNLINLQTLNYFIVEEQNGSGIKELAKMNNLHGTIKITGLGNVIDHEDAAKANLKDKKYLEELYMVFDGRREEMNDPMVESIVSVLEALEPNCNLKKLTIENYNGNRFPNWLMDSHLPNLVSLELKNCGLCSDLPSLDQLPLLKKLYIRECPKLKASIPKGDSMIELHLEKCDRILVNGLSSRLKKFVLSENRYTEFSMEQNLVNCMILEELDLDVRGFVNCPSLDLSCYNSLRDLSIRGWHFSSSLPFSLHLFTNLRTLKLYDCPQLESFGRGGLPSNLIYLKIENCPKLIGSREEWGLFQLNSLQTFIISDEFENVESFPEENLLPPTLYELYLIECSKLRIMNYKGFLHLNSLYRLYIWDCPSLESLPEEGLPSSRSNLLIEECPIIRENTTTNEMWPQAEIKQADSLDQPITALVQLEALQVPHLNRVLNENRNKISVDDDKKKLKVQRGQRPRNESKEQWASVFWFLGGFEVVAFFASSSIFRCSPEPRSQECTASLQFIQISVCVSLAKNLSLFVLTLSVSL 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00356 1186 Gene3D Ribonuclease Inhibitor 532 835 IPR032675 -
Tsu03g00356 1186 Coils Coil 122 142 - -
Tsu03g00356 1186 Pfam Rx N-terminal domain 9 98 IPR041118 -
Tsu03g00356 1186 Gene3D - 415 500 IPR036388 -
Tsu03g00356 1186 PANTHER DISEASE RESISTANCE PROTEIN RP 32 1030 IPR044974 GO:0006952
Tsu03g00356 1186 PRINTS Disease resistance protein signature 590 606 - -
Tsu03g00356 1186 PRINTS Disease resistance protein signature 197 212 - -
Tsu03g00356 1186 PRINTS Disease resistance protein signature 366 380 - -
Tsu03g00356 1186 PRINTS Disease resistance protein signature 270 284 - -
Tsu03g00356 1186 PANTHER OS05G0414200 PROTEIN 32 1030 - -
Tsu03g00356 1186 Gene3D - 15 130 - -
Tsu03g00356 1186 Coils Coil 39 59 - -
Tsu03g00356 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 429 IPR027417 -
Tsu03g00356 1186 SUPERFAMILY RNI-like 744 1033 - -
Tsu03g00356 1186 Pfam NB-ARC domain 177 416 IPR002182 GO:0043531
Tsu03g00356 1186 SUPERFAMILY L domain-like 489 817 - -
Tsu03g00356 1186 Gene3D - 162 324 IPR027417 -
Tsu03g00356 1186 Gene3D - 329 414 IPR042197 -
Tsu03g00356 1186 Gene3D Ribonuclease Inhibitor 836 1047 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00356 Tsu-Chr3 3068663 3084609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00356 170 500 WRKY Transcription Factor Family AT5G45050 24.713 8.22e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00356 - - mtr:MTR_3g027470 1177.16