Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00347 ATGTCAAAAAAGAAGTCTACCTTAGGTAGACAAAAAATAccaattgaaaaaatattgaaaaaaagtcATTTACAAGTTACTTTTTCCAAGCGCCGATCAGGATTATTTAAAAAAGCCAGTGAACTTAGCACTCTCTGTGGAGTTGAGATTGCAATTGTAGTTTTTTCTCCGGCTGATAAGGCATTCTCTTTTGGTCATCCTGAAGTTGAGTCTATCATAGATCGCTATTTTACTCGCAATCCTCCACAAGAATCTAGTGCGCACCAACTCGTTGAGGTTCATAGAAATGCTAATGTGCGCGATCTCAACATCCAATTGACTCAACTTCTTAACCATTTGGAGATTGAAAAGAAACAAGGGGAAGAGATTGAACACATGAGGAAAGATAGGCAAAGGAAATTTTGGTGGGAGAGCCCTATTGATGAGCTTGGCTTGAATGAATTGGTCCAATTAAAGGGTTCTATTGAGGAGTTGAAGCAAAACATAGGAAAATTTGCTAACAAATGCATGATGGAACAAGCTAATGTTTTCTCACCAAATGTTGGAGCTAATGGATTTGGACGTTATGATTCCCTTGATAACAAATTTGGTGTTGGGATTAATATTGCTTCCTCATTTCCTAATGGCTATTATCCTGGTTTTCGTAATGggtattttgaaatttaa 666 0.3544 MSKKKSTLGRQKIPIEKILKKSHLQVTFSKRRSGLFKKASELSTLCGVEIAIVVFSPADKAFSFGHPEVESIIDRYFTRNPPQESSAHQLVEVHRNANVRDLNIQLTQLLNHLEIEKKQGEEIEHMRKDRQRKFWWESPIDELGLNELVQLKGSIEELKQNIGKFANKCMMEQANVFSPNVGANGFGRYDSLDNKFGVGINIASSFPNGYYPGFRNGYFEI 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00347 221 Gene3D - 88 178 - -
Tsu03g00347 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tsu03g00347 221 Coils Coil 148 168 - -
Tsu03g00347 221 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tsu03g00347 221 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Tsu03g00347 221 CDD MADS_MEF2_like 9 76 IPR033896 GO:0000977|GO:0045944
Tsu03g00347 221 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu03g00347 221 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu03g00347 221 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu03g00347 221 PANTHER MADS BOX PROTEIN 7 177 - -
Tsu03g00347 221 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
Tsu03g00347 221 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 177 - -
Tsu03g00347 221 Coils Coil 99 119 - -
Tsu03g00347 221 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00347 Tsu-Chr3 2944725 2945390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00347 5 183 Type I MADS-box Gene Family AT5G60440 52.198 4.92e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu03g00347 SRF-TF 2.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00347 - - gmx:100793705 321.242