Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00344 ATGGGATCTATCTATGAAGATATCCATGATCTTCCAAATTTTTCACCTTTTGAAGcagaggatgatgatgatgcatgTCTCTCTGCTATGCTTCTTTGTTGTGGTCCAATGATTTATACTTCAGTATTGAAAGCTGCAATTGAACTCAACTTGTTTGAGATCATAGCTAAGGCAAATCCACCATGTGTTTCAGCATCATATATTGCTTCAAAACTATCAACAACACAACATCCTCAATTGCCTCGAAGGCTTGATCGAATGTTGTGTTTACTTGCAAGTCACTCTCTTCTTGTTTGTTCTACAAGAACAAATGAAGAAGGTGGGAGTGAAAGATTTTATGAACTTTCATTGACTGGTAAATACTTTGTTAAAGATGAGAAAAATGGTTCTGTTGCTTTGTTCTCATCGTTTATGAATCACCAAAAGTTCATGGATGCATTCAACAATTTTAAGGAAGTACTATCAAACTGTGAAAATGGACTATACATGAATGTTCATGGAATGCCAGTTTATCAAGGCATACAGTCTGATCCAGCTTGGAATCATGTGTTTAACAAATCAATGGCTGATATTTGCACAAtagaaatgaagaaaatattagaaaaatacaAAGGATTTGAAGGAATATCAATGTTGGTTGATATTGGAGGAGGAATTGGGCAAAGTTTGAATATGATAATCTCTAAGTATCCTTCTATAAAGGGCATTAATTTTGATTTGCCTCAAGTCATACAACATGCTCCAATTTATCCAGGAATTGAGCATGTTGAAGGAGACATGTTTAAGAGTGTCCCAAAAGGCGATGCCATAATATTAAAGGCTATATTACACAATTGGTCAGATGAAAATTGTTTGAAAGTTCTAATTAAGTGCTACAATGCTTTGCCAAACCATGGTAAAGTAATTGTTGTGGACTTCATAATGCCTCGAGAAATTCAGCATACAAAAGCAGATAAGTTGATAACTAGCTTTGACAACCTCATGTTTCTGGATAGTGGTGTTgaaagaacaaagaaagaatttgaaaagTTATGCAAATGCTCTGGATTTTCTAGTTTTCATGTTctctctctctctctcgccgGAGAAAATAACTCGGAGTTTTCTACCGACCGCCGGAAAATCAACAAACTCATCCagGTTTTATTCGCTTCACACATGGAATCATCAGCTGAAGATTATGCTGCATTTGAAGAGAAAGTTAAAAGGACAGCGTACTTTGACAACATGTCACCACAAGTTACTGAGTCGGTGATTAGGAGTGCTCTTGACCAGTTCGCAATCGTGAAAAGTGTCAAGTTTATCCCCAACAACATAGGACCAAACAGTCTGCCACAAAGTGCATTGGTGGAATTGGATTCTGCCAAGAAGGTGAAGCAAGTGATAGCGATGATGAAGCAGTATCCATTCATGATGTCTGGGATGCCACGACCCGTAAGAGCTAGTGCTTCCGTAATGGAAATGTTTGATGACCGGCCAATAAAGCCCAATAGAAGGATGAAGTGTTGCTGGCTGGACCAAACGGATCCTTATTTTGAGGTGGCTATGGAACTGAAATTTGTTACACGGAAACACTCTGCAGAGATAACCAAAATGCATGAATTGCTActaaaagaagaagagaagctAGCAACCCAGCAGGCCGAAACTCTTAAAGTGCATTACAAAAAGTTTAGGATGATAGAGGGCATTATGACAGACAAAACTGCCCATACTTTGGCAAGAAAGTACAATCTGGCTGTTGCAGATGAGTGA 1755 0.3573 MGSIYEDIHDLPNFSPFEAEDDDDACLSAMLLCCGPMIYTSVLKAAIELNLFEIIAKANPPCVSASYIASKLSTTQHPQLPRRLDRMLCLLASHSLLVCSTRTNEEGGSERFYELSLTGKYFVKDEKNGSVALFSSFMNHQKFMDAFNNFKEVLSNCENGLYMNVHGMPVYQGIQSDPAWNHVFNKSMADICTIEMKKILEKYKGFEGISMLVDIGGGIGQSLNMIISKYPSIKGINFDLPQVIQHAPIYPGIEHVEGDMFKSVPKGDAIILKAILHNWSDENCLKVLIKCYNALPNHGKVIVVDFIMPREIQHTKADKLITSFDNLMFLDSGVERTKKEFEKLCKCSGFSSFHVLSLSLAGENNSEFSTDRRKINKLIQVLFASHMESSAEDYAAFEEKVKRTAYFDNMSPQVTESVIRSALDQFAIVKSVKFIPNNIGPNSLPQSALVELDSAKKVKQVIAMMKQYPFMMSGMPRPVRASASVMEMFDDRPIKPNRRMKCCWLDQTDPYFEVAMELKFVTRKHSAEITKMHELLLKEEEKLATQQAETLKVHYKKFRMIEGIMTDKTAHTLARKYNLAVADE 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00344 584 Gene3D Vaccinia Virus protein VP39 181 355 IPR029063 -
Tsu03g00344 584 Gene3D - 391 488 IPR012677 -
Tsu03g00344 584 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 358 IPR029063 -
Tsu03g00344 584 SUPERFAMILY RNA-binding domain, RBD 398 480 IPR035979 GO:0003676
Tsu03g00344 584 Pfam O-methyltransferase domain 151 351 IPR001077 GO:0008171
Tsu03g00344 584 PANTHER O-METHYLTRANSFERASE 1 368 IPR016461 GO:0008168
Tsu03g00344 584 Gene3D - 38 199 IPR036388 -
Tsu03g00344 584 Pfam Dimerisation domain 42 92 IPR012967 GO:0046983
Tsu03g00344 584 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 368 - -
Tsu03g00344 584 SUPERFAMILY "Winged helix" DNA-binding domain 21 126 IPR036390 -
Tsu03g00344 584 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 370 IPR016461 GO:0008168
Tsu03g00344 584 CDD RRM_SF 406 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00344 Tsu-Chr3 2920363 2926188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00344 22 356 Monolignol Biosynthesis Gene Families AT5G54160 47.788 7.24e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00344 - - cam:101492092 611.683