Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00334 TCTGAACCGGAATATAAGTTTATTGGGAAGATAGTTGAAGAGGTCTCTATGAAAATCAACCGTGTTCCTTTGCATGTTGCAAACAATCCAGTTGGGTTGGAGTCTCGAGTGTTAGGAGTGATATCTCTCCTTGGACATGAATCTGACGAGAGAGTCAGCATGGTAGGCATTTATGGAATCGGTGGAATAGGCAAATCAACAACTGCTCGGGCTGTGCATAACTTAATTGCTGATCAATTCGAAGGTGTGTGCTATCTTGCTGACATAAGAGAGAGGGCAATTAGTCATGGTCTTGCTCATCTCCAAGAAACATTGCTTTCTGAAATACTTGGCGAGAAAGACATTAAAGTGGGAGATGCTTACAGAGGAATTTCAATAATTAAAAGGAGGCTTCAAAGAAAGAAAGTCCTTTTGATTCTTGATAATGTTGACAAAGAGAAGCAGTTACAGTCACTTGCAGGAGGACATGATTGGTTTGGCTGTGGCAGCAAGATCATAATCACTACAAGAGACAAGCATCTGCTGGCTACTCATGGGATTACGAAAGTATATGAGGTTAAACAGCTTGAAAATGAAAAGGCTCTAGAATTATTTGGTAGGCAtgcatttaaaaataaaaaaattgatccaGGTTATGTCAATATTGCAAAACATGCAGTTTCTTATTGTCATGGTCTTCCCTTGGCTTTGGAGGTGATAGGTTCTCAATTGTTTGGAAAAAGTATAGCTGTATGGAAATCCTCATTAGATAAATATGAAAGAGTCCTTCGTAAAGACATCCATGAAATTCTAAAAGTTAGCTATGATGATTTGGAAGACAATGAGAAGGGTATTTTTCTTGACATAGcctgtttttttaattcttatGAAATAGGCTATGTCAAAGAAATGCTATACTTGCATGGTTTTCATGCGGAAGATGGTATACAAGAGCTAATTGACAAATCTCTCATGAAAATTGATGCCAATGGTCGTGTGAGAATGCATGACTTGATTCAAGACATGGGCAGAGAAATTGTGAGGCAAGAATCAACATTGGAGCCTGGAAGACGCAGCAGATTGTGGTTTAGTGATGACATTGTTCGTGTTTTAGAAGAAAACAAGGGAACTGATACAGTTGAAGTCATAATTGCCGACTTGCACAAAGACAAAAAAGTGAAATGGTGTGGAAAAGCCTTTgggaagatgaagaacttgagAATTCTTATAGTTAGAAATGCACGATTTTCCAGAGGTCCCCAAATTCTACCCAATAGTTTGAAAGTGCTTGATTGGTGTGGATATCCATCATCCTCTTTACCATCTGATTTTAATCCCAAGAATCTTGCAATACTTAATATGCCTGAAAGTTGCCTTAGATGGTTTGAATCACTCAAGGCAagtattctttttaaaaaatcgtATGTCTTTAAGATGTTGAGCTATCTAGATTTTGAAGGCTGCAAATTCCTAACTGAAGTACCTAGCTTATCTAGAGTAGCAAATTTAGGGGCTCTGTGTCTTGATTATTGCACTAATTTAATTAGAATCCATGACTCGGTTGGGTTTCTTGATAGACTTGTGTTGTTAAGTGCTCAAGGATGCACCCAACTACGAAGTTTGGTTCCTCTCATAAAATTGCCATCTCTAGAGACTTTAGATCTAAGGGGTTGCTCGCGTCTTGAGAGCTTCCCAGAAGTAGTCGGAGTGATGGAGAATATAAAAGATGTTTATTTAGATCAGACTGCCCTAGAACAATTGCCTTTTACAATTGGAAATCTTGTTGGGCTACAACGTTTGTTCTTGAGGGGATGCCGAAGGGTGATTCGGCTACCAAGCTACATATTGCCTAAACTTGAGATAATAACAACTTATGGCTGTAGGGGATTTCGAGCAATTGAAAAGGAAGAGAAAATGAGTCCAAAAGTGTTTGCCAATGCCATGTGTCTTTATCATGAATATGGGAAGTCCTTCCTTCATGTGTATTCTCGCAATATAAGCTCCAACAATGTCATAGAAGTATGTACACCTTGGTGGAATCACCATGGATATAATATTGAGAATCTTGAATTTGAACTCTTTCGTCTGAGAAATTCAATGGGAGGAGTAAATGTGGGTAAGCTTAAAAGGAATGAATCATTAGTATGTTTTTGGTTTCGAAAAAACTTCCCCAGGATAGCTCTATGGTGTTTTGTAGAACCTGGAAAGCATTTTGACAACATGGTATTTGATTTCAAGTTGAATGTTCTCATCAATGGGACTAACCAACTTGCTTCTTCATGTGAATACATATTTTATGCACAAGAAAATACACATCAAGTTCTTTGTTGTGATCTACAATGTAAAGTGGAGGGTGTATTTTCAGAGAATGAGTGGAGCCATGTGGAGATTTTATGTGAGATGGAACATCTCATGCCATGTGATTCTAAAAGGGCCATGGCCTACCGGGATTGGACCAATAATAGGATTCTGAAGTGGTCTCTCCTATATGTCTACCCAGAAAATGAAGAGGAAGATTACAGGTTATTTGACAATACTGATTCTCCTCTATCAACTAAAGAGATAGTTTCAGAGGAGCAGATATTACAAGAACGTCTACTGATGAGCCCCTTCACCTTGCCTAGATCGGAAAGAGAATTGTGGGATTATAATATGAAGTTAAATGTGAATATAAGCCATGGGGTTCTATGCGATTTTAGAGAGATGGAGCCATTTCGAGTGAGGAAGGGTATTGATAAATTTCGTCAAATCTGGTTTTTAAGAAAGGTGATAGTGGAACAAGAATATCCTGAGCGTTATTTGAATAGTTTCATTTTTAGAGTAGTATTAAACTGTCTCATAGCATCAAAGAGAAACATAACTGGTACTTATGCTGAAGCTTTTGCAAAACATGAGGTGAGGTTTAGAGGTGAGAAGGAAAAGTTGAAGAAATGGAGGGATGCTTTGCATCAAGCTGCTAGTGTGTCTGGATGGCATTTCAAACCAGGGTCTGAACCCGAATATAAGTTCATTGGAAAGATAGTTGAAGATGTCTCAGAAATGATCATGTGCgaaaaaattgatggatttcTGAAAGTTAgcaatgatttttttgaaaaaatatttgatgatttGGAAGAAATCTGTGATGATTTGGAAGAAGgtgttgaagaaatctttgaTGATTTGGAAGAAGGCGTTGAAGAAATCTTTGATGATTTGGGTGATGATTTGGAAGAAGGTGTGAAGggtatttatcttaatattgtTAATTTCTTTGATTCTTAA 3246 0.3626 SEPEYKFIGKIVEEVSMKINRVPLHVANNPVGLESRVLGVISLLGHESDERVSMVGIYGIGGIGKSTTARAVHNLIADQFEGVCYLADIRERAISHGLAHLQETLLSEILGEKDIKVGDAYRGISIIKRRLQRKKVLLILDNVDKEKQLQSLAGGHDWFGCGSKIIITTRDKHLLATHGITKVYEVKQLENEKALELFGRHAFKNKKIDPGYVNIAKHAVSYCHGLPLALEVIGSQLFGKSIAVWKSSLDKYERVLRKDIHEILKVSYDDLEDNEKGIFLDIACFFNSYEIGYVKEMLYLHGFHAEDGIQELIDKSLMKIDANGRVRMHDLIQDMGREIVRQESTLEPGRRSRLWFSDDIVRVLEENKGTDTVEVIIADLHKDKKVKWCGKAFGKMKNLRILIVRNARFSRGPQILPNSLKVLDWCGYPSSSLPSDFNPKNLAILNMPESCLRWFESLKASILFKKSYVFKMLSYLDFEGCKFLTEVPSLSRVANLGALCLDYCTNLIRIHDSVGFLDRLVLLSAQGCTQLRSLVPLIKLPSLETLDLRGCSRLESFPEVVGVMENIKDVYLDQTALEQLPFTIGNLVGLQRLFLRGCRRVIRLPSYILPKLEIITTYGCRGFRAIEKEEKMSPKVFANAMCLYHEYGKSFLHVYSRNISSNNVIEVCTPWWNHHGYNIENLEFELFRLRNSMGGVNVGKLKRNESLVCFWFRKNFPRIALWCFVEPGKHFDNMVFDFKLNVLINGTNQLASSCEYIFYAQENTHQVLCCDLQCKVEGVFSENEWSHVEILCEMEHLMPCDSKRAMAYRDWTNNRILKWSLLYVYPENEEEDYRLFDNTDSPLSTKEIVSEEQILQERLLMSPFTLPRSERELWDYNMKLNVNISHGVLCDFREMEPFRVRKGIDKFRQIWFLRKVIVEQEYPERYLNSFIFRVVLNCLIASKRNITGTYAEAFAKHEVRFRGEKEKLKKWRDALHQAASVSGWHFKPGSEPEYKFIGKIVEDVSEMIMCEKIDGFLKVSNDFFEKIFDDLEEICDDLEEGVEEIFDDLEEGVEEIFDDLGDDLEEGVKGIYLNIVNFFDS 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00334 1081 SUPERFAMILY L domain-like 376 674 - -
Tsu03g00334 1081 Gene3D - 188 272 IPR042197 -
Tsu03g00334 1081 SUPERFAMILY "Winged helix" DNA-binding domain 259 365 IPR036390 -
Tsu03g00334 1081 Gene3D Ribonuclease Inhibitor 370 684 IPR032675 -
Tsu03g00334 1081 Pfam NB-ARC domain 40 269 IPR002182 GO:0043531
Tsu03g00334 1081 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 533 IPR044974 GO:0006952
Tsu03g00334 1081 SMART AAA_5 51 190 IPR003593 -
Tsu03g00334 1081 Gene3D - 911 1015 IPR035897 -
Tsu03g00334 1081 PRINTS Disease resistance protein signature 130 144 - -
Tsu03g00334 1081 PRINTS Disease resistance protein signature 538 554 - -
Tsu03g00334 1081 PRINTS Disease resistance protein signature 54 69 - -
Tsu03g00334 1081 PRINTS Disease resistance protein signature 223 237 - -
Tsu03g00334 1081 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 4 533 - -
Tsu03g00334 1081 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 926 1005 - -
Tsu03g00334 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 282 IPR027417 -
Tsu03g00334 1081 Gene3D - 10 182 IPR027417 -
Tsu03g00334 1081 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 926 1005 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00334 Tsu-Chr3 2776399 2799029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00334 3 620 WRKY Transcription Factor Family AT4G12020 35.514 1.97e-86 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00334 - - mtr:MTR_3g020650 1381.7