LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g00333	ATGGAACAATCAATACTACCATCTTTGTCTTCTTTTACATGTGATTGGACATACGATGTTTTTCTTAGCTTTAGAGGCATCGATACTAGAAACAACTTCACTGGTAATCTCTACAACTATCTTCAGCATCAAAGAGGTATACAAACTTTCATTGATGACGAGGAAATTCAAAAAGGAGAACAAATTACACCTACTCTTCTTCAAGCCATTAAAGAGTCTAGGATTTTCATTGCTATTTTCTCCCCTAACTATGCATCTTCAACTTTCTGTTTGACTGAACTTGTTACCATCATCGAGTGTTCCAAGTCACAGGGAAGGTTGTTTTTGCCAGTTTTTTATGATGTGGATCCATCACATATTAGAAACATAACTGGAACTTATGCCGAAGCTTTTGCAAAACATGAGGTGAGGTTTAGAGATGAGAAGAAAAAGGTTCAGAAATGGAGGGATGCTTTACGTCAAGCTGCTAATATGTCTGGGTGGAATTTCAAACCAGGGTCTGAATCAGAATATAAGTTTATTGGAAAGATAGTTGAAGAGGTATCGATAAAGATCAACCGCGTTCCTTTGCATGTTGCAAACAACCCAGTTGGGTTGGAGTCTCGAATGTTCGAAGTGACATCTCTCCTTGGATTTGAGTCTGATAAGAGAGTCAACATGTTAGGCATTTATGGAATCGGCGGAATAGGCAAATCAACAATTGCTCGTGCTGTGCATAACTTGATTGCCGATCAATTCGAAGGTGTGTGTTTTCTTGCTGACATAAGAGAGACGGAAATTCATCATGGTCTGGTACATCTCCAAGAAACACTACTTTCAGAAATACTTGGTGAGAAGGATATTAAAGTGAGAGATATTCACAGAGGAATTTCAATAATTAAAAGGAGGCTTCAAAGAAAGAAAGTCCTTTTGATTCTTGATAATGTTGACAAAGAAAAGCAGTTACAGGCGCTTGTTGGAGAACATGATTGGTTTGGCTCCGGCAGCAGGATCataatcactacaagaaacaAACATTTGCTGGCTACTCATGGGGTTGTGAAAGTATACGAAGTTAAACAGCTTGAAAATGAAAAGGCTCTTGATTTATTTAGTTGGCATgcatttaaaactaaaaatattgatcCAGGTTATGTGAATATTGCAAAACGTGCAGTATCATATTGTCACGGTCTTCCCTTGGCTTTGGAGGTGATAGGTTCTCAACTGTTTGGAAAAAGTTTAGCTGTATGGAAATCCTCTTTAGATAAATATGAAGGAGTCCTTCGTAAAGACATCCATGACATTCTGAAAGTTAGCTATGATGATTTAGAAGAAGATGTGAAGGGTATTTTTCTAGATATTGcttgtttcttcaattcttatGATATAAGCTATGTCAAAGCAATACTATACAACCATGGTTTTTATGCGGAAGGTGGCATCGAAAAGCTAACTGACAAATGTCTCATGAAAATTGATGTCAATGGTCGTGTGAGAATGCATGACTTGATTCAAGACATGGGCAGAGAAATTGTGAGGAAGGAATCACCATTGGAGCCTGGAAGACGCAGTAGATTATGGTTTAGTGATGACATTGTTCCTGTTTTGGAAGAAAACAAGGGAACTGATACAATTGAAGTCATAATCGCTGACTTGCATAAAGACAGAGAAGTGAACTGGTGTGGAGACGCCTTTGGGCAGATGAAGAACTTGAGAATTCTTATAATTAGAAATGCACAATTTTCCAGAGGTCCTCAAATTCTTCCGGATAGTTTGAGAGTGCTTGATTGGCGTGGATATCAATCATCCTCTTTACCATTTAATCCCAAGAATCTCGTAGTACTGCATCTTCCTGAAAGTCACTTTGAATGTTTCGAATCAATCAAGGTGTTTGAGACGTTGAGCTTTCTGAATTTTGAAGGCTGCAAGTTCCTTACTGAAGTACCTAGTTTATCCAGTGTACCATATTTGAGAGCATTATGCCTTGATGACTACACTAATTTAAATAGAATCCATGACTCGGTTGGGTTTCTTGACAAGCTTGTTTCATTAAGTGCTCAAGATTGCACCCAACTAAAATGTTTGGTTCCTTCCATCAACTTGCCATCTTTAGTTAGTTTAGATCTAAGTGGTTGCTCATGTCTTGAGAGCTTCCCTGAAGTATTAGGAGTGAtgagaaatataaaatatgtttatttagACCATACTAGCATAAAACAATTGCCTTATACAATTAGAAATCTTGTTGGGCTCCAACGTTTGTTCTTGAGGGGATGTCTAAGGATGACTCAGCTACCAAGCTACATATTGCCTAAAGTTGAGATAATAACAACTTATGGTTGTAGGGGATTTCCATCAtctgaaaatgaagaaaaagtgaTTCCAAAAGTGTTTGCAAAGGCCATGTGTGTTTATAATGAATATGGGAAGACTTTTCTTGATGTGTATTCTAGTAATAATTACTCCAAAGATGTCATAGAAGTATGTAGTCCTTTGGAGAATGACAGTGGAAAAAATCTTATGATTGATGAAATTGAAGCCTCTTTTGATAAGTATGAACAGGAGAGGGTAAAATTGGGTAAGCTTAGAAGGAATAAATCATCAATGTCTTTTTGGTTCCGAAAGAAATTCCCCAGGATAGCTCTATGTTTTTTTGTAGAATCCAAAAGAAATAAATCTGGAAAGGATTTCAAGTTGAAAGTACTCATCAATAGCACTACAAAACTCACTTCTTCATGTgaatacatattttattcacaAAAGGAGATGGAACATATGCTTTGTTGTGATCTACAATGCAAAGTGGAGGGTCTATTTTCAGAGAATGAGTGGAACCATGTGGAGATTTTATGTGAGATGGAACATCTAATGCCTAGTGATTCTAAAAGGGTTTTGGCCCACCAGGATTGGACCACTAAGACGGTTCTAAAGCGGTCTCTCCTATATGTGTacctagaaaaagaaaatgacttctGCTTATTTGACAATCTTGATCTTCCCTCTGtttcaacaaaagtaaaatttctAGATCTTCTTCGAACAATTGAAAAAGTTGAAGAGATGCAGCAGGGATTACCTACAAGAGTACGGTGGCATGCAACTTAg	3087	0.3589	MEQSILPSLSSFTCDWTYDVFLSFRGIDTRNNFTGNLYNYLQHQRGIQTFIDDEEIQKGEQITPTLLQAIKESRIFIAIFSPNYASSTFCLTELVTIIECSKSQGRLFLPVFYDVDPSHIRNITGTYAEAFAKHEVRFRDEKKKVQKWRDALRQAANMSGWNFKPGSESEYKFIGKIVEEVSIKINRVPLHVANNPVGLESRMFEVTSLLGFESDKRVNMLGIYGIGGIGKSTIARAVHNLIADQFEGVCFLADIRETEIHHGLVHLQETLLSEILGEKDIKVRDIHRGISIIKRRLQRKKVLLILDNVDKEKQLQALVGEHDWFGSGSRIIITTRNKHLLATHGVVKVYEVKQLENEKALDLFSWHAFKTKNIDPGYVNIAKRAVSYCHGLPLALEVIGSQLFGKSLAVWKSSLDKYEGVLRKDIHDILKVSYDDLEEDVKGIFLDIACFFNSYDISYVKAILYNHGFYAEGGIEKLTDKCLMKIDVNGRVRMHDLIQDMGREIVRKESPLEPGRRSRLWFSDDIVPVLEENKGTDTIEVIIADLHKDREVNWCGDAFGQMKNLRILIIRNAQFSRGPQILPDSLRVLDWRGYQSSSLPFNPKNLVVLHLPESHFECFESIKVFETLSFLNFEGCKFLTEVPSLSSVPYLRALCLDDYTNLNRIHDSVGFLDKLVSLSAQDCTQLKCLVPSINLPSLVSLDLSGCSCLESFPEVLGVMRNIKYVYLDHTSIKQLPYTIRNLVGLQRLFLRGCLRMTQLPSYILPKVEIITTYGCRGFPSSENEEKVIPKVFAKAMCVYNEYGKTFLDVYSSNNYSKDVIEVCSPLENDSGKNLMIDEIEASFDKYEQERVKLGKLRRNKSSMSFWFRKKFPRIALCFFVESKRNKSGKDFKLKVLINSTTKLTSSCEYIFYSQKEMEHMLCCDLQCKVEGLFSENEWNHVEILCEMEHLMPSDSKRVLAHQDWTTKTVLKRSLLYVYLEKENDFCLFDNLDLPSVSTKVKFLDLLRTIEKVEEMQQGLPTRVRWHAT	1028

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g00333	1028	Gene3D	Ribonuclease Inhibitor	532	794	IPR032675	-
	Tsu03g00333	1028	SUPERFAMILY	"Winged helix" DNA-binding domain	425	530	IPR036390	-
	Tsu03g00333	1028	Pfam	TIR domain	18	184	IPR000157	GO:0007165
	Tsu03g00333	1028	Gene3D	-	354	438	IPR042197	-
	Tsu03g00333	1028	PRINTS	Disease resistance protein signature	220	235	-	-
	Tsu03g00333	1028	PRINTS	Disease resistance protein signature	693	709	-	-
	Tsu03g00333	1028	PRINTS	Disease resistance protein signature	296	310	-	-
	Tsu03g00333	1028	PRINTS	Disease resistance protein signature	389	403	-	-
	Tsu03g00333	1028	SMART	AAA_5	217	355	IPR003593	-
	Tsu03g00333	1028	SMART	till_3	17	158	IPR000157	GO:0007165
	Tsu03g00333	1028	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	12	710	IPR044974	GO:0006952
	Tsu03g00333	1028	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	183	448	IPR027417	-
	Tsu03g00333	1028	Pfam	NB-ARC domain	213	435	IPR002182	GO:0043531
	Tsu03g00333	1028	SUPERFAMILY	L domain-like	542	779	-	-
	Tsu03g00333	1028	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	12	710	-	-
	Tsu03g00333	1028	Gene3D	-	186	350	IPR027417	-
	Tsu03g00333	1028	Gene3D	-	14	185	IPR035897	-
	Tsu03g00333	1028	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	161	IPR035897	-
	Tsu03g00333	1028	ProSiteProfiles	TIR domain profile.	16	185	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g00333	Tsu-Chr3	2767525	2775750	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g00333	12	788	WRKY Transcription Factor Family	AT4G12020	32.266	2.74e-86	304

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g00333	-		-	mtr:MTR_3g020650	1509.58