Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00330 ATGGAGAGCCATGATAAGGTGCTTATGCTAATGGTGTACACTTTCTTCTTTTGCTCCATGCCCACTTTCTCTAAACAAAATACTCTTACTACTATTGCTCCAAATCAGTTTATCCAATACAATGATACCCTTGTTTCTGCAGCTGGAACCTTTGAAGCAGGTTTTTTCAACTTCGGAGATCCACAACAACAATACTACTTCGGAGATCCACAACGACAATACTTTGGTATATGGTACAAGAACATATCACCAAGGACTATTGTGTGGGTTGCTAATAGAGACACGCCAGCACAAAACTCAACGGCGATGATGAAACTTACTGATCAAGGAAGTCTTGTAATTGTTGATGGTTCCAAAGGCATTATCTGGAACTCCAATTCATTAAGCATTGCGGTGAAATCAGTTGTTGTGCTGTTGTTGGACTCAGGAAACCTTGTTGTGAAAGAGGCAAATAGTGGTAGCGAGAATGAGGATTTTCTGTGGGAAAGTTTTTATTATCCCGGTAACACTTTCCTTCCCGGAATGAAGCTAAAAAGTAATTTAGTTACTGGTCCATATAGATATCTCACATCTTGGAGAAACTCTAACAATCCTGCTGAAGGTGAATGTTCGTATAGGATAGATACACATGGTTTTCCTCAACTGGTTACTGCAAAGGGATCAATAATTCTGTATAGAGCAGGATCATGGAATGGATTTCATTTCGCTGGTGTTTCTGGGAAAAAATTGCATGGATTCTTGAATTTCTCAAGCGTGTTCACTGACAAAGAATTCTCTTATCAATATGAAACTTTGAACAGTTCAATTATTACTAGAATGGTGCTAGATCCAGACGGAAATACACAACGTTTTCTGTGGTCAGATAGGAAACAAATTTGGCAGGTTATAACTACTCATCCTGCAGACCAGTGTGATGAATATGCCTTGTGTGGTATCAACTCTAACTGCAATATTAATGACTTCGACTTTCCAGTATGCCAATGCTTGGAAGGTttcatgccagaatttcaaataaaatggaAGTCATCGAATTGGTTAGATGGGTGTCTAAGGAGAACACATTTAAATTGTCTCCATGGAGATGGATTTTTGAAGTACACGAGCATGAAATTGCCAGATACGTCAGCATCGTGGTTTGACAAGAGCATGACCCTTGAGGAATGCAAGACAATGTGTTTGAAAAACTGTTCTTGCACTGCATATGCAAATTTAGATATCAGAGATGACGGGAGTGGCTGCATACTTTGGTTTGACAACCTTGTGGACATGAGAAAACATCCAGACCAAGGACAAGACATTTACATACGGCTAGCATCTTCTGAATTAGGATGTATACAAATGTTGTTTCACAAGAAGGAGAATGAAGATGGTGACTCGGcaacaatatttgatttttcaatcATCGCAAGTGCAACAAATCACTTCTCCTACAGAAACAAGATAGGAGAAGGTGGTTTTGGACCAGTATACATGGGCATAATGGTAGATGGCCAACAGATTGCTGTTAAGAGGCTGTCTAAAACATCAGGACAAGGAATAGAGGAATTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGAAATCTTGTAAAACTACTTGGTTGTTCTATTCAACAGGATGAAAAGTTGTTGATCTACGAATTCATGCCCAACAAAAGCTTGGATTactttatttttgATACTATGCGAAGAAAATTACTCGATTGGTCAACGCGCTTGGAAATTATTGATGGGATTGCTCGGGGGCTGCTGTATCTCCATCGAGATTCTACACTGAGAATCGTACATAGAGATCTCAAGACAAGCAATATTCTTCTTGATATTAATATGATCCCAAAGATATCAGATTTTGGTTTAGCCAGATCATTCATGGGAGACCAAGCTGAGGCTAATACAAATAGAGTGATGGGAACATATGGATATATGCCTCCAGAATATGCAGTGCATGGATCTTTCTCGATAAAATCTGATGTTTTTAGCTTTGGAGTCGTTGTTCTTGAGATAATTAGCGGCAAGAAGAATAGCAGATTTAGTGACCCTCAACATGGTCTAAACCTTCTTGGGCATGCATGGAGACTATGGATTGAAGGAAGACCAGAGGAGTTGATAGCCGAGATATTATATGATGAGGCGATATGTTCAGAAATAATAAGATGTATTCAAGTGGGTCTATTGTGTGTACAACAGAAACCAGAAAATAGGCCTAACATGTCATCTGTGGTTTTTATGTTAAAGGGTGAAAAGTTACTCCCCGAACCAAGTGAACCCGGGTTCTACACAGGAAGAAATAATACAAATAGCACAGGATCTTCTTCAAAAGGGTGTTCAATAAATGAAGTTTCAATCTCATTGTTAGAGGCACGATAG 2373 0.3831 MESHDKVLMLMVYTFFFCSMPTFSKQNTLTTIAPNQFIQYNDTLVSAAGTFEAGFFNFGDPQQQYYFGDPQRQYFGIWYKNISPRTIVWVANRDTPAQNSTAMMKLTDQGSLVIVDGSKGIIWNSNSLSIAVKSVVVLLLDSGNLVVKEANSGSENEDFLWESFYYPGNTFLPGMKLKSNLVTGPYRYLTSWRNSNNPAEGECSYRIDTHGFPQLVTAKGSIILYRAGSWNGFHFAGVSGKKLHGFLNFSSVFTDKEFSYQYETLNSSIITRMVLDPDGNTQRFLWSDRKQIWQVITTHPADQCDEYALCGINSNCNINDFDFPVCQCLEGFMPEFQIKWKSSNWLDGCLRRTHLNCLHGDGFLKYTSMKLPDTSASWFDKSMTLEECKTMCLKNCSCTAYANLDIRDDGSGCILWFDNLVDMRKHPDQGQDIYIRLASSELGCIQMLFHKKENEDGDSATIFDFSIIASATNHFSYRNKIGEGGFGPVYMGIMVDGQQIAVKRLSKTSGQGIEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNKSLDYFIFDTMRRKLLDWSTRLEIIDGIARGLLYLHRDSTLRIVHRDLKTSNILLDINMIPKISDFGLARSFMGDQAEANTNRVMGTYGYMPPEYAVHGSFSIKSDVFSFGVVVLEIISGKKNSRFSDPQHGLNLLGHAWRLWIEGRPEELIAEILYDEAICSEIIRCIQVGLLCVQQKPENRPNMSSVVFMLKGEKLLPEPSEPGFYTGRNNTNSTGSSSKGCSINEVSISLLEAR 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00330 790 MobiDBLite consensus disorder prediction 760 776 - -
Tsu03g00330 790 ProSiteProfiles Protein kinase domain profile. 475 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00330 790 Pfam S-locus glycoprotein domain 225 335 IPR000858 GO:0048544
Tsu03g00330 790 Pfam D-mannose binding lectin 86 193 IPR001480 -
Tsu03g00330 790 Gene3D - 24 164 IPR036426 -
Tsu03g00330 790 Gene3D Phosphorylase Kinase; domain 1 448 550 - -
Tsu03g00330 790 CDD PAN_AP_plant 353 438 - -
Tsu03g00330 790 PIRSF SRK 445 790 IPR024171 GO:0004674
Tsu03g00330 790 PIRSF SRK 2 453 IPR024171 GO:0004674
Tsu03g00330 790 SMART serkin_6 475 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00330 790 ProSiteProfiles Bulb-type lectin domain profile. 29 160 IPR001480 -
Tsu03g00330 790 Pfam PAN-like domain 357 423 IPR003609 -
Tsu03g00330 790 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 20 445 - -
Tsu03g00330 790 Pfam Domain of unknown function (DUF3403) 752 790 IPR021820 GO:0004674
Tsu03g00330 790 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 450 789 - -
Tsu03g00330 790 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 445 - -
Tsu03g00330 790 Pfam Protein tyrosine and serine/threonine kinase 477 743 IPR001245 GO:0004672|GO:0006468
Tsu03g00330 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 198 IPR036426 -
Tsu03g00330 790 CDD B_lectin 41 167 IPR001480 -
Tsu03g00330 790 Gene3D Transferase(Phosphotransferase) domain 1 551 752 - -
Tsu03g00330 790 SMART ntp_6 358 437 IPR003609 -
Tsu03g00330 790 SUPERFAMILY Protein kinase-like (PK-like) 459 757 IPR011009 -
Tsu03g00330 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 596 608 IPR008271 GO:0004672|GO:0006468
Tsu03g00330 790 CDD STKc_IRAK 481 748 - -
Tsu03g00330 790 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 450 789 - -
Tsu03g00330 790 Gene3D Hepatocyte Growth Factor 354 439 - -
Tsu03g00330 790 SMART blect_4 35 167 IPR001480 -
Tsu03g00330 790 ProSiteProfiles PAN/Apple domain profile. 357 438 IPR003609 -
Tsu03g00330 790 MobiDBLite consensus disorder prediction 756 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00330 Tsu-Chr3 2751145 2754734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00330 456 760 Receptor kinase-like Gene Family AT4G23230 57.097 1.29e-119 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g00330 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00330 - - mtr:MTR_3g019580 1216.06