Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00323 ATGCAGGAGAAGATGGTTGAGATTGAGTTTTTATCGGCAGTGGTGAAGTCTCTTACGAGGGATTCAGAAGAGAGGAGGGAAGCAGTGGGACTGTTGCTAGACCTCTCTAACGTTTCAGCAGTTCGAAGGCGGATCGGTAGAATTCAAGGGTGTATTGTTATGTTGGTCGCCATCCTTAATGGAGATGACCCTGTTGCTTCACATGATGCAGCAAAGTTATTGGATATTTTGTCTAGCAATAATCAAAATGCACTTCATATGGCTGAGGCTGGCTACTTTAGGCCACTGGTTCAGTATTTGAAGGAAGGGTCTGACATGAACAAGATCCTAATGGCAACAGCACTTTCTAGGTTGGAACTCACTGATCACAGCAAACTTACCCTTGGAGAAGATGGAGCGGTCGAGCCCCTTGTCAAAATGTTTATCACTGGGAAACTTGAATCCAAGTTATCATCTTTAAACGCACTACAAAATCTGTCTACATTGACCGAAAATGTGCAACGTTTAATTCGATCAGGAATCACAGGATCTTTGCTACAACTTCTTTTCTCTGTAACGTCAGTTCTCATGACTCTAAGAGAGCCTGCATCAGCCATTCTTGCAAGAATTGCTCAGTCCGAATCCATTCTCGTCAATGAAGATGTTGCTCAACAGATGCTTTCACTTTTGAATCTTTCAAGCCCTATAATTCAAGGTCATCTATTAGAAGCTCTAAATAGCATGTCTTCTCATGTTGGTGCATCCAAAGTGAGACGAAAAATGAAGGAAAAGGGTGCGCTTCAACTTCTTCTACCATTTCTTAAGGAAAGTAACACCAATATTAGGTGTAAGGTCTTGAATTTGCTATGCACACTCTCTAAAGATATAACCGATGAGTTGACCGAATATCTTGACGAACCTCATCTTTTCAACATTGTTAATATTGTCTCATCATCCACATCAGAGAGCGAAAAAGCAGCTGCGGTTGGCATACTGAGTAATCTTCCTGCTAGCGATAAAAAAGTAACCGATATACTAAAGAGGGCAAATTTGCTACCGATTTTGATATCCATTTTAAATACTAGCAATGCAAGTAAATCGCCAGCAGCAAATAGCTTAACCGAGAATGCTGCCGGTGTTATAAACCGCTTCACGAATTCGTCTGACAAGAAGCTACAACATGTTTCAGTACAACACGGGGTGATTCCTTTGCTCGTAAAATTGCTCTCAACAAGTTCACCAATCACAAAATCAAGGGCTGCAAACTCTTTAGCTCAATTATCACAAAATTCTCTTTCTCTTAGGAAATCTAGAAAGGTAAGGTGGTTATGTGTTCAACCTTCATCAAATGCATATTGTGAAGTTCATGATGGATATTGCTTTGTCAATAGCACATTTTGTTTGGTCAAAGCAGGCGCAGTTCCTCGACTTATTGAAATATTGGAAGATAAAGAGAAAGAAGTAGTTGAAGCTTCTCTTGTTGCGCTTTCGACTCTCTTGCAAGATGAAATTTGGGAAGGTGGTGTGAGTTTCATTGAGAAGTTATCAGGTGTGCAAGCTATTATAAAAAGTCTAGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAAAATATTTAAGGTTGAAGAACATAGAGTAAAATATGGTCAATATGCTCAAGTGGTTCTTATTGATTTGGCACAAAAAAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTAGCTGAGCTTGAGCTTTTGCAAGCTCAATCAAGTTACTTTTGA 1761 0.3964 MQEKMVEIEFLSAVVKSLTRDSEERREAVGLLLDLSNVSAVRRRIGRIQGCIVMLVAILNGDDPVASHDAAKLLDILSSNNQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLTLGEDGAVEPLVKMFITGKLESKLSSLNALQNLSTLTENVQRLIRSGITGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNSMSSHVGASKVRRKMKEKGALQLLLPFLKESNTNIRCKVLNLLCTLSKDITDELTEYLDEPHLFNIVNIVSSSTSESEKAAAVGILSNLPASDKKVTDILKRANLLPILISILNTSNASKSPAANSLTENAAGVINRFTNSSDKKLQHVSVQHGVIPLLVKLLSTSSPITKSRAANSLAQLSQNSLSLRKSRKVRWLCVQPSSNAYCEVHDGYCFVNSTFCLVKAGAVPRLIEILEDKEKEVVEASLVALSTLLQDEIWEGGVSFIEKLSGVQAIIKSLEVGDAKVQEKALWMLEKIFKVEEHRVKYGQYAQVVLIDLAQKSDSRLKSTVAKVLAELELLQAQSSYF 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00323 586 SUPERFAMILY ARM repeat 111 541 IPR016024 -
Tsu03g00323 586 Gene3D - 1 120 IPR011989 -
Tsu03g00323 586 Gene3D - 121 434 IPR011989 -
Tsu03g00323 586 Gene3D - 452 583 IPR011989 -
Tsu03g00323 586 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 2 586 - -
Tsu03g00323 586 Pfam Armadillo/beta-catenin-like repeat 460 492 IPR000225 GO:0005515
Tsu03g00323 586 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 586 - -
Tsu03g00323 586 SMART arm_5 247 287 IPR000225 GO:0005515
Tsu03g00323 586 SMART arm_5 332 379 IPR000225 GO:0005515
Tsu03g00323 586 SMART arm_5 162 205 IPR000225 GO:0005515
Tsu03g00323 586 SMART arm_5 80 120 IPR000225 GO:0005515
Tsu03g00323 586 SMART arm_5 382 422 IPR000225 GO:0005515
Tsu03g00323 586 SMART arm_5 121 161 IPR000225 GO:0005515
Tsu03g00323 586 SMART arm_5 454 494 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00323 Tsu-Chr3 2657214 2660739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00323 5 586 U-box Gene Family AT1G20780 28.363 5.00e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00323 K08332 - gmx:100791453 902.894