Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00317 ATGAAAGAGTTGGTTGCTGGAgcatttctttcttctttctttcaagTCATTTTTGAGAAGTTGGCTTCAAGTAATTTCACAGACTATTTTCACAGAAGCAaacttgatgatttggtggaaGAACTTGAGTCTACACTCGATTCTATCAACCAAGTGTTAGATGATGCAGAGATAAAGCAATACCAATTCCCAAACGTCAAGAAGTGGCTTTGCGATGTTAAACATGCGATGTATGAGGCTGATCAACTACTTGATGAGATTGCTACTGATGCACCACTCAAGAAGCTGAAGGCTGAATCTCAACCTTCTACTAGCAATAATATTGTCAACTTCATTCCAACTCTTACTAATCCATTTAAATCCAGGATcaaagaattgataaagagccTGCATTCTCTTGTAGAGCAAAAGGATGATCtgcaattgaaaaataaaacgTATGCCGGTAATGCAGTTGGATTCAATTCGAAACCTTCAGGAATAGAAGAAACTACATGTTTGGTGGATGCATCTGGCATATATGGTAGAGACGGTGATAAAGAAGAAATGATCAAAACTTTACTTTCTTCAGAGAATGGTAGCAGCAACCAGACACCTATAATCAGCATAGTTGGTTTGGGTGGGATGGGCAAGACCACCTTTGCTAAGCTTGTGTACAATGACAACAAGATAGTGGAGCATTTTCAACTTAAAGCTTGGGTCTATGTTTCAGAATCTTTTGATGTTGTTGGACTCACCAAAGAAATTTTCAAGACATTTAATTCTTCGGCCGAGGGTGAATCGAATTTAAATCTACTCCAACTGCGGCTGCAACAAACACTAACTGGCAAAAAGTATCTTCTTGTTTTGGATGATATTTGGAATGGAAATGAGGAGAGTTGGGAGCAGTTACTACTACCCTTTAACCATGGATCTTCTGGAAGTAAGATTATTGTGACAACACGTGACAAGGAGATAACATATGTCCTGAAATCCACCAAGTTATTTCATTTACAACAATTGAACAAAAGCGATTGTTGGAGTTTATTTGTGACACATGCGTTTGATGGCAAGAATCTGGACGGATATCCACATCTTGAACAAATTGGCATGAAAATAGTGGACAAGTGTGGAGGATTGCCTTTAGGTGTAAAAACACTGGGCCAACTCTTGCGAAGAAAATTCTCAGAACATGAATGGATGAAGATATTAGAGACTGATATGTGGCGATTATCAGATGAGGACAACAATATTAACCCAGTGCTGAGATTGAGTTACCATAATCTCCCATCTAATCGGAAGCGTTGTTTTGGTTATTGTTCTATATTTCCCAAAGGTTATGGCTTTGACAAAGGTGGATTAATCAAGTTTTGGATGGCAGAAGGTTTGTTGAAGTGTTCCGTAGATGACAAAAGTGATGAACAGTTGGGTAATGAAATTTTCAGCGATCTTGAGtcaatttcatttttccaaAAATCAGTTGGGTATTACCCATTCGTCATGCATGATCTTGTGAATGATTTAGCAAAATCAGTGTCAGGAGAATTTTGTATGCAAATAGAGGGTTATAGGGTCGAAGGTATCCCTGAAAGAACACGTCACATTCGACTGtttgttgaaaatttaaattgtgGTGATAAATTACTAGAGTCAATTTGTGAGTGCAAGGGACTACGTAGTCTGATAGTAGAACGCTACGCAGCTACGTTGATAAGCAACAATGTGCAACGTGGTCTGTTTTCAAGACTAACATGTTTGCGGATGTTATCATTTAGATGTCATGATCTCTCAAAGCTAGTTGATGAGATAggcaatttaaaacttttgcgCTATCTAGACCTTTCTGACACAAAGATTAAAAGCTTACCTGATACCATTTGTATGTTGTATAATTTGCAAACACTCTTGTTGACATGGTGTGATAAATTGACAGAGCTCCCTTCAAATTTTTCCAAACTCATCAATTTACAGCATCTTGAAATTCCTCATATAAAAAAGATGCCGAAGAATATAGGAAAGTTGAACAAACTTCAGTCCTTAACTTACTTTATTGTGGAAGAGCAGAACGGATCTGTTCTTAAGGAGTTGGAGAAACTAAACCATCTTCATGGAAGAATTAATATTACAGGACTGGGTAATGTCATTGATCCTGCAGATGCTGCCATGGCCAATTTGAAAGATAAGAAATATTTAGAAGAATTACTTATGAAGTTCTATGATAAAATAGAAGAAATGAATGACTCAATTGTTGAAAGACATGTATCTGTCTTGGAGGCCCTTCAACCTAATAGCAACTTGAAGAAGCTCACCATTGTAAACTACAATggtaattcttttccaaattgGCTAAGGGGCTGTGATTTACCCAACTTGGTATCTCTTAATCTGGTGAATTGTAGATTATGTTCTCATTTGCCGCCACTTGGTCAGTTTCCTTTACTGAAAGAGCTTTGTATAAGTACATGTCCCAAATTGAAGGTATCAATTGACAAGGGTGATAGTATGATAGAGTTATATCTATCGAATTGTGGTCGGATTTTGGTAAATGAATTGCCGACCAGCTTGAAAAAGTTTGCCCTTCTAGAAAATCGGTACGTCAAGTTCTGTGAGGACCAAAATTTAGTAAACTGTACCATTCTAGAAGTGTTGCAGTTTGATTTAAAAGGAATTGTAAAGCGTCCCTCTTTAGATTTGCATTGCTATAATTCTCTTGATTATCTTTCAATAACAGGATGGGACTCCTCCTCCTTGCCTTTTTCACTACATCTCTTCATCAATCTTCAACATCTCCGTTTGTTCGATTGCCCACAGATGGAATCATTTCCAAGGGGAGGTTTGCCTTCCAAGTTGTGGAAACTTGGAATATCCAATTGCCCAAAACTGATTGGTTCGAGAGAGGAGTGGGGTTTGTTCCAACTCAATTCTTTGAATTGGTTGATAATTAATGATCATAAGTTTGAAAACGTGGAGTCATTCCCAGAGGAGAATCTGCTGCCACCAACTCTTGAGTTTCTTgaaataagaaattgttcaaaGCTAAGAATAATGAACAACAAGGGTTTTCTCCACCTCAATTCTCTCTATTGTCTATATATTTACAACTGCCCTAGTCTTGAGAGCTTGCCAGAGGAGGGTCTTCTCCACCTCAATTCTCTTCATACGTTGTCCATCAAGAATTGTCCAATAATAAGGGAGAAGTACAAAAAGGAGGGAGGAGAGCTTTGGCATACAATTCGTCACATCCCTTATGTGCGTATTGAATGA 3243 0.362 MKELVAGAFLSSFFQVIFEKLASSNFTDYFHRSKLDDLVEELESTLDSINQVLDDAEIKQYQFPNVKKWLCDVKHAMYEADQLLDEIATDAPLKKLKAESQPSTSNNIVNFIPTLTNPFKSRIKELIKSLHSLVEQKDDLQLKNKTYAGNAVGFNSKPSGIEETTCLVDASGIYGRDGDKEEMIKTLLSSENGSSNQTPIISIVGLGGMGKTTFAKLVYNDNKIVEHFQLKAWVYVSESFDVVGLTKEIFKTFNSSAEGESNLNLLQLRLQQTLTGKKYLLVLDDIWNGNEESWEQLLLPFNHGSSGSKIIVTTRDKEITYVLKSTKLFHLQQLNKSDCWSLFVTHAFDGKNLDGYPHLEQIGMKIVDKCGGLPLGVKTLGQLLRRKFSEHEWMKILETDMWRLSDEDNNINPVLRLSYHNLPSNRKRCFGYCSIFPKGYGFDKGGLIKFWMAEGLLKCSVDDKSDEQLGNEIFSDLESISFFQKSVGYYPFVMHDLVNDLAKSVSGEFCMQIEGYRVEGIPERTRHIRLFVENLNCGDKLLESICECKGLRSLIVERYAATLISNNVQRGLFSRLTCLRMLSFRCHDLSKLVDEIGNLKLLRYLDLSDTKIKSLPDTICMLYNLQTLLLTWCDKLTELPSNFSKLINLQHLEIPHIKKMPKNIGKLNKLQSLTYFIVEEQNGSVLKELEKLNHLHGRINITGLGNVIDPADAAMANLKDKKYLEELLMKFYDKIEEMNDSIVERHVSVLEALQPNSNLKKLTIVNYNGNSFPNWLRGCDLPNLVSLNLVNCRLCSHLPPLGQFPLLKELCISTCPKLKVSIDKGDSMIELYLSNCGRILVNELPTSLKKFALLENRYVKFCEDQNLVNCTILEVLQFDLKGIVKRPSLDLHCYNSLDYLSITGWDSSSLPFSLHLFINLQHLRLFDCPQMESFPRGGLPSKLWKLGISNCPKLIGSREEWGLFQLNSLNWLIINDHKFENVESFPEENLLPPTLEFLEIRNCSKLRIMNNKGFLHLNSLYCLYIYNCPSLESLPEEGLLHLNSLHTLSIKNCPIIREKYKKEGGELWHTIRHIPYVRIE 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00317 1080 Gene3D Ribonuclease Inhibitor 511 863 IPR032675 -
Tsu03g00317 1080 Gene3D - 164 328 IPR027417 -
Tsu03g00317 1080 Coils Coil 32 59 - -
Tsu03g00317 1080 Pfam NB-ARC domain 179 420 IPR002182 GO:0043531
Tsu03g00317 1080 PRINTS Disease resistance protein signature 200 215 - -
Tsu03g00317 1080 PRINTS Disease resistance protein signature 273 287 - -
Tsu03g00317 1080 PRINTS Disease resistance protein signature 370 384 - -
Tsu03g00317 1080 PRINTS Disease resistance protein signature 597 613 - -
Tsu03g00317 1080 PANTHER DISEASE RESISTANCE PROTEIN RP 17 1036 IPR044974 GO:0006952
Tsu03g00317 1080 SUPERFAMILY L domain-like 493 832 - -
Tsu03g00317 1080 PANTHER OS05G0414200 PROTEIN 17 1036 - -
Tsu03g00317 1080 Coils Coil 123 143 - -
Tsu03g00317 1080 Gene3D Ribonuclease Inhibitor 866 1063 IPR032675 -
Tsu03g00317 1080 Gene3D - 419 505 IPR036388 -
Tsu03g00317 1080 ProSiteProfiles Leucine-rich repeat profile. 601 622 IPR001611 GO:0005515
Tsu03g00317 1080 Pfam Rx N-terminal domain 9 97 IPR041118 -
Tsu03g00317 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 433 IPR027417 -
Tsu03g00317 1080 Gene3D - 14 137 - -
Tsu03g00317 1080 Gene3D - 333 418 IPR042197 -
Tsu03g00317 1080 SUPERFAMILY L domain-like 755 1057 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00317 Tsu-Chr3 2619034 2622276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00317 172 387 WRKY Transcription Factor Family AT5G45050 27.556 2.10e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00317 - - mtr:MTR_3g027470 1158.28