Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00278 ATGGAAGCCCTTGCTGTTacaatctttgaaaaattgaGCTCTTCTGCTTACAAAGAGTTTGGAATCATTTGGAATCTCAAAGAGGATATCGAACGAATGAAGAACACAGTCTCCATGATAAAAGCTGTGCTTCTCGATGCAGAGGCCAAAaccaataatcatcaagttaGTAATTGGTTGGAGGAGCTGAAAGACATACTTTATGATGCAGATGATTTACTAGATGATTTTTCCACTGAAGATCTGAATAGAAAAGTGATGGCTAGAAACAGCATTGTAAGACAGACAcaaattttcttctcaaaatcaaacaaacttgCCTATGGCCATAGATTGGGCCATAAAATGAAGGCAATCCAAAAGAGGCTAGATGACATTGCTAAAATTAAGCATGCACTGCAACTGAATGAAAGCCCTGTCGAGAATCGAATTATATATCGGGAACAAAGACAAACTTACTCTTTTGTGAGTAAAAATGAAGTTCTTGGAAGAGATGAGGAAAAGAAATGCATTAAAAGTTATCTACTTGACATCAATGCAGCGGATAATGTTTCTATAATCCCCATAGTCGGCATTGGAGGATTAGGTAAGACTGCACTTGCACAAATAGTTTACAATGATAATGATGTTCAAAGGCATTTTGAGCTAAAAATGTGGGTGTATGTGTCGGATGAATTTGATATAAAGAAAGTAGCTCAAGATATCATTGGGGACGAAAAGAATAGCAAGATGGAGCCAGTGCAACAAAAACTTAGAAGCAAAATTGAAGGGAAGAAGTTTTTGCTTGTGTTAGACGACATGTGGAACGAGGATCGTGAGTTGTGGCTTAAATTGAAGAGCTTGTTCGTGGAAGGAGGAAAAGGAAGCATGATAATTGTTACAACCCGTAGTCAGACTGTGGCAAAAATCACGGGCACACATCCACCCCTTTTCTTAAAAGGTTTGGATTCACAAAAATCGCAGGAGCTATTCTCTCGAGTTGCTTTCGGTGAGTTGAAAGAACAAAATGATTTGGAGTTGTTAGATATAGGAAGGGACATTGTTAAGAAATGTGCTGGCATTCCCCTCACCATAAGAACTATTGGCAGCCTTTTGTTTTCTCGAAATTTGGGAAGAAGTGATTGGCTATATTTCAAGGATGTTGAGTTTTCAAAGATAGATCAACACAAGGACAAAATCTTTGAAATCCTTAAACTGAGTTATGATCATCTTCCCTCATTTCtgaaaaaatgttttgcttATTGTTCTTTGTTTCCAAAAGGTTTTGTGTTTGAAAAAAACACACTCATTCAGTTATGGGTAGCTGAGGGGTTCATTCAACAATCAAATGATATTAGATGTGTAGAAGATGTTGGTCATGAGTACTTCATGAGTTTGCTTTCAATGTCCTTCTTTCAAGATGTCACTATAGATGATTGTGGTGGCGTAAGTACTTGTAAAATGCATGACCTTATGCATGATGTAGCACAACTAATTGCCGGGAATGAATATGTTCTGGTTGATGGAGAGGAAGCAAACATTGGAATCAGAACACGTTATTTGTCATCTCGTACTGCATTACAGTTGGCTCCGACATCATCTTCCTACAAGTTAAGGACATTTCTTTTACATCCACAGATCAATGCAAGCAATTGTTTGCACCAGTCATATGATCTTTCCTTGTCAGGCCTAAAATTCTTACGTGTGCTGACACTTTGTGGGTTGAAAATTGTAGCAATCACTAATAGTTTTGAAGACATGAAGCATTTAAGATATCTTGATCTATCACAGAATACTGCACTGAAACATCTTCCATCGGGCATTACTAGCCTACAGAACTTGCAAACTCTAAAACTTTCTGGATGTACTGATCTCAGGATATTACCAGAAAATCTCAATAAAAGTCTGAGGCATCTTGAGCTGAATGGTTGCAATAGATTGACATGTATGCCACAGGGGTTAGGGAAGTTGACTAATCTTCAAACACTAACATGTTTTGTACTGAGCAATGGAAGTACAAGTGTCAATGAGTTGGGTGAGCTTAACAACCTTAGAGGGAGATTAGAAATAAAAAGATTGGATCTCCTGCGAAATAATGCTGCAGAGATTCAATCTGCAAAAGTACTTCTTGGGAAGCGACACCTTCAACAATTAGAATTGCGGTGGTTGTATGATGACGATTCCCATCCATGGTTGTCAGCACCGTCATTATTCGTTGAACAAAAAGGATCCTGTCCGGAAGATGAGATGATTTTACAAGGCCTGCTGCCACACCACTCACTTCGAAAACTAGTTATTGATGGATTTTGCGGCAAAAGTTTACCAGACTGGATAGGGAATCTCTCATCGTTCTTGACTCTTGAGCTCCACAACTGCAATTGTTTGACATCACTACCCGAATCAATATGTAACCTTGTATCTTTGCAGAAACTTTGCATTTATAACTGCTTACTGTTGCAAGAAAGATATGCAAGACCATATGGTAAAGACTGGCGAAGAATCTCTTCCATCCGAGAAGTTGAGATACTTCCTATGAGACCATCATTGCTCAAGTATTTTAGTTGA 2544 0.3746 MEALAVTIFEKLSSSAYKEFGIIWNLKEDIERMKNTVSMIKAVLLDAEAKTNNHQVSNWLEELKDILYDADDLLDDFSTEDLNRKVMARNSIVRQTQIFFSKSNKLAYGHRLGHKMKAIQKRLDDIAKIKHALQLNESPVENRIIYREQRQTYSFVSKNEVLGRDEEKKCIKSYLLDINAADNVSIIPIVGIGGLGKTALAQIVYNDNDVQRHFELKMWVYVSDEFDIKKVAQDIIGDEKNSKMEPVQQKLRSKIEGKKFLLVLDDMWNEDRELWLKLKSLFVEGGKGSMIIVTTRSQTVAKITGTHPPLFLKGLDSQKSQELFSRVAFGELKEQNDLELLDIGRDIVKKCAGIPLTIRTIGSLLFSRNLGRSDWLYFKDVEFSKIDQHKDKIFEILKLSYDHLPSFLKKCFAYCSLFPKGFVFEKNTLIQLWVAEGFIQQSNDIRCVEDVGHEYFMSLLSMSFFQDVTIDDCGGVSTCKMHDLMHDVAQLIAGNEYVLVDGEEANIGIRTRYLSSRTALQLAPTSSSYKLRTFLLHPQINASNCLHQSYDLSLSGLKFLRVLTLCGLKIVAITNSFEDMKHLRYLDLSQNTALKHLPSGITSLQNLQTLKLSGCTDLRILPENLNKSLRHLELNGCNRLTCMPQGLGKLTNLQTLTCFVLSNGSTSVNELGELNNLRGRLEIKRLDLLRNNAAEIQSAKVLLGKRHLQQLELRWLYDDDSHPWLSAPSLFVEQKGSCPEDEMILQGLLPHHSLRKLVIDGFCGKSLPDWIGNLSSFLTLELHNCNCLTSLPESICNLVSLQKLCIYNCLLLQERYARPYGKDWRRISSIREVEILPMRPSLLKYFS 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00278 847 SUPERFAMILY L domain-like 480 811 - -
Tsu03g00278 847 Gene3D Ribonuclease Inhibitor 528 833 IPR032675 -
Tsu03g00278 847 PANTHER OS10G0130600 PROTEIN 16 806 - -
Tsu03g00278 847 Pfam Leucine rich repeat 560 615 IPR001611 GO:0005515
Tsu03g00278 847 Pfam Rx N-terminal domain 8 91 IPR041118 -
Tsu03g00278 847 PRINTS Disease resistance protein signature 254 268 - -
Tsu03g00278 847 PRINTS Disease resistance protein signature 602 618 - -
Tsu03g00278 847 PRINTS Disease resistance protein signature 186 201 - -
Tsu03g00278 847 PRINTS Disease resistance protein signature 351 365 - -
Tsu03g00278 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 415 IPR027417 -
Tsu03g00278 847 Pfam NB-ARC domain 182 402 IPR002182 GO:0043531
Tsu03g00278 847 Gene3D - 142 307 IPR027417 -
Tsu03g00278 847 PANTHER DISEASE RESISTANCE PROTEIN RP 16 806 IPR044974 GO:0006952
Tsu03g00278 847 Gene3D - 6 117 - -
Tsu03g00278 847 Gene3D - 395 491 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00278 Tsu-Chr3 2278455 2283061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00278 167 847 WRKY Transcription Factor Family AT5G45050 22.819 3.77e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00278 - - mtr:MTR_3g015500 1243.8