Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00272 ATGAGTATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCATCCCCTTCCCTtcaccatcatcaacaacaacaaaatcaaaaccaaccCATTTCACATGATCACAATTCAAATCACCCTTTACCTTCATCAGCTTCATTAAGTGTTGGTTTTGGCATTTTTCCACTCTTAACAGCCACACCCTGCAtgccacaacaacaacaacctcaaaacAATGATGTTCAAGAAAAtcctaacaataacaacaacttTTGGAACCTTAGGATGTGTCCTGAAGCAATGAATCTTCCAAAAAAAGGAGTTAtcaatgttgatgatgaaaatCACAATCATAACAACAACAGTAATAATAGTAACAAGATGGTTTTGATGGAGAGTGAAGAAAATGGTGTTTATGGTTCTGAGTATAGAGTTTGTCATGATTGTGGTAATAGAGCTAAGAAagattgtgtttttagaagatGTAGGACTTGTTGTAAGGGAAGAGGTTATGATTGTAATACTCATTTGAAGAGTACATGGATTCCTTCGACTCGTCGCCGGGAACGTGAGGTGGAGAtggttgttggtggtggtggtagtggtggtggtggtgatggtgagGGTTGTTCTGGTGTTAAGAGAGCAAAAACTTTATTAGGGTCATCACAAAATGCTACTGCTACTTCTCATAGTTCAAACTCTAATGGTACTACTCCAAGAAGTTTTGCTACTAGCACTTGTCATCAAGATGCTGGTTTCAAAGAGGCATTACCAGGCCATGTTCATGCACCAGCTGTATTCAGAGGCCATAGAGTAACTGCTATTGGCAATGGTGAAGATGAATTTGCTTACTTGGCAACAGTTCATATTTGTGGTCATGTGTTTAAAGGGTTTCTCTATGATCATGGTGTTGATGGAAAAAATCCAATGCCTTGTGTTTCAGAACTTCAATTAGGAAGTGGAAAGAATGGTGAATGTTCTTCTGCAATTGGTGTTACAACAAATAATGCTTACCCTGCTTCTGCTAGCTAG 1014 0.3284 MSMLGLRDLVLIAPSPSLHHHQQQQNQNQPISHDHNSNHPLPSSASLSVGFGIFPLLTATPCMPQQQQPQNNDVQENPNNNNNFWNLRMCPEAMNLPKKGVINVDDENHNHNNNSNNSNKMVLMESEENGVYGSEYRVCHDCGNRAKKDCVFRRCRTCCKGRGYDCNTHLKSTWIPSTRRREREVEMVVGGGGSGGGGDGEGCSGVKRAKTLLGSSQNATATSHSSNSNGTTPRSFATSTCHQDAGFKEALPGHVHAPAVFRGHRVTAIGNGEDEFAYLATVHICGHVFKGFLYDHGVDGKNPMPCVSELQLGSGKNGECSSAIGVTTNNAYPASAS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00272 337 MobiDBLite consensus disorder prediction 62 83 - -
Tsu03g00272 337 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 336 IPR007818 GO:0003700|GO:0006355
Tsu03g00272 337 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 336 - -
Tsu03g00272 337 MobiDBLite consensus disorder prediction 214 239 - -
Tsu03g00272 337 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 251 298 IPR006511 -
Tsu03g00272 337 MobiDBLite consensus disorder prediction 17 44 - -
Tsu03g00272 337 Pfam Domain of unknown function (DUF702) 137 299 - -
Tsu03g00272 337 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 138 180 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00272 Tsu-Chr3 2197333 2201563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00272 1 317 C2H2 Transcription Factor Family AT5G12330 41.304 9.66e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tsu03g00272 DUF702 5.1e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00272 - - gmx:100806835 389.037