Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00259 atgaaaatcccTTGTTGTTCGGTGTGCCAAACGCGGTACAACGAAGAAGAACGagttcctcttcttcttcaatgtgGCCATGGTTTCTGTAGAGAGTGTCTTTCTAGAATGTTCTCAGCTTCATCTGACGCTACTCTCACCTGTCCACGGTGTCGTCATGTCTCAACCGTCGGGAATTCGGTTTTAGCTTTACGGAAGAATTATGCGGTGCTTTCGTTAATCCATTCCGCCATGGAAGCTTCAGCTGCCGGTGGCGGTAACCGAGGTTCGAATTTCGAATGTGATTTAACTGACGATGATGAAGACGGTGATGGTGAAGATGACGATGAGGATGACGAGGAGAAACGACGTCGGAATAGCCGCGGCTCGCAGACTTCGAGTTCTGGTGGTTGTGCTCCGGTGATTGAGGTCGGTGTTCATCAGGATTTGAAATTAGTGAAGCGGATTGCGGAAGGAAGGAGAGCTGGTGTTGATATGTGGACGGCGGTGATCGGAGGTGGACGGTGTCGGCATCATGTGGCGGTGAAGAAAGCGGTTATAACTGAGGGaatggatttggattggatGTTAGTGAAATTGGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGGAATGTTTGTACTTTTCATGGTGCGATGAAGGTTGATGAGAGTTTGTGTCTTGTGATGGATAAATGTTATGGATCGGTTCGCTCTGAGATGCAGCGGAATGAAGGAAGACTCACATTGGAGCAAGTTTTAAgATATGGAGCAGACATTGCACGAGGGGTTGTTGAGCTTCACGCTGCAGGCGTTGTTTGCATGAATTTAAAGCCTTCCAATCTACTTCTTGACTCAAATGGTCATGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCTCGACCTGAATGTGACTCCACAAAGATCCATTCCTGTATGGAATGTATAATGCTTAGCCCACATTATACTGCACCAGAGGCTTGGGAACCTGTGAAGAAATCATTAAATTTGTTTTGGGATGATGGAATAGGTATATCTCCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTCGAGATGTGCACCGGAGCCATTCCTTGGGCTGGTTTAAGTGCAGAGGAAATCTATCGATTAGTTGTCAAGGCAAAGAAACAGCCTCCACAATATGCTAGTGTGGTTGGTGGAGGAATTCCAAGGGAACTGTGGAAGATGATTGGAGAGTGCTTACAATTCAAACCATCTAAAAGACCTACCTTCAATGCAATGCTGGCAATATTTCTCCGTCATTTGCAAGAAATTCCACGCAGCCCTCCTGCAAGCCCTGATAATGACCTTGTTAAGGGATCTGTATCAAATGTGACAGAGGCTTCCCCAGTACCTGAATTAGAAGTCCATCAGGACCCAAATCATCTTCATAGACTTGTGTCTGAAGGGGATGTCGCTGGTGTTAGAGAATTTCTGGCAAAGGCTGCAACAGAAAATGAAAGCAACTACATGTCTTCTCTGTTGGAAGCTCAAAATGCTGATGGACAAACAGCTCTCCACTTGGCTTGTAGACGTGGCAGTGCAGAACTTGTTGAGACAATTCTGGAGTATGAAGAGGCTAATGTTGATGTCTTGGACAAAGATGGGGATCCTCCTCTTGTTTTTGCCTTAGCAGCTGGGTCTCATGAATGCGTGCGTAGCCTTATCAAAAGAAATGCTAGCGTGAGGTCACGATTGAGAGATGGGTTTGGCCCATCGGTAGCTCATGTTTGTGCTTATCATGGTCAGCCAGATTGTATGCGAGAGTTGCTTTTAGCTGGAGCTGATCCCAATGCAATTGATGATGAAGGTGAATCAGTACTGCATAGGGCAATTGCCAAGAAGTTCACAGACTGTGCTCTTGTGATAGTGGAAAATGGAGGCTGTAGATCGATGACCATCTTGAATTCAAAAAACCTGACACCACTGCACTTGTGTGTAGGGACGTGGAATGTATCTGTTGTGAAGAGATGGGTGGAGGTTGCAACTTCTGATGAGATTGCTGAAGCAATCGACATACCAAGCCCTATCGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAAAGTGAGGGGAGAGAGTTGGTGCGGATATTGCTTACAGCAGGAGCTGATCCATCTGCCCAAGATTCACAGAATGGGAGGACAGCTTTGCATACCGCTGCTATGACAAATGATGTGGAATTGGTTCAGGTTATTCTTGCTGCTGGTGTTGATGTGAACACTCGCAATGTGCACAATAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGTTGGACTGCTTCTAGCTGCTGGAGCGGATTATAATTTGCAGgatgatgatggtgataatGCTTTCCATATAGCAGCAGAAACAGCAAAAATGATACGCGAAAATCTGGACTGGCTTATTGTTATGCTAAAGAATCCCGATGCTGATATTGAAGTCCGAAACCACAGTGGCAAGACACTACGGGACATCTTAGAGGCTCTACCCCGAGAATGGATATCCGAAGATCTGATGGAGGCACTCTCAAATAGAGGCGTTCATTTATCTCTTACGATATTTGAAGTGGGAGATTGGGTGAAGTTTAAAAGAACTGTCACAACTCCAACACACGGGTGGCAAGGTGCTAGACCAAAGAGTGTTGGCTTTGTGCAAAGTGTTCCAGACAAGGATAATCTAATCGTTTCATTTTGCTCGGGAGAGGTTCATGTTCTGCCAAATGAAGTTATAAAAGTTGTTCCATTGGACAGGGGGCAACATGTACAACTGAAAGGAGATGTAAAAGAGCCTAGGTTTGGTTGGCGTGGGCAGTCACGTGACAGCATTGGGACTGTATTATGTGTCGACGATGATGGAATTCTCCGTGTTGGGTTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGTGTTGAGGAATTCAAGGTTGGAGATTGGGTTCGTATTCGTCCAACTCTTACATCTGCAAAACATGGATTAGGATCTGTGACACCAGGAAGCATTGGCATTGTATATTGTATCCGACCTGACAGTAGTCTGTTAATTGAACTGAGCTATCTTCCAAATCCTTGGCATTGTGAACCAGAGGAGGTTGAGCATGTTCCTCCTTTTAGGATTGGTGATAAGGTATGTGTGAAGCGATCTGTCGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGTGAGATTGAGAACGATGGTCTCTTAGTAATAGAAATACCAAATCGACCCATACCATGGCAAGCTGATCCATCTGATATGGAGAAGGTGGAAGATTTTAAGGTTGGAGATTGGGTCAGAGTGAAAGCTTCAGTATCTTCTCCAAAATATGGATGGGAGGATATTACAAGGAACAGTGTTGGGGTAATTCACAGCTTGGAGGAGGATGGCGATGTGGGTGTTGCCTTTTGCTTCAGAAGCAAGCCTTTTTCTTGCTCAGTCACTGATGTGGAGAAAGTTCCTCCTTTTGAGGTGGGACAAGAAATTCATGTGATGCAATCTGTTAGTCAGCCACGGCTTGGGTGGTCAAATGAATCGCCAGCTACTGTTGGAAAAATAGTGAGAATTGACATGGATGGTACCCTCAATGCAAAGGTCACCGGTAGGCAGAGCTTGTGGAAAGTATCTCCTGGAGATGCCGAACGACTTCCAGGGTTTGAGGTTGGGGATTGGGTACGCTCTAAACCAAGCCTGGGAAATAGACCTAGTTACGACTGGAATAGTGTTGGGAGAGAGAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGTTATTTGGAGTTGGCTTGCTGTTTCCGTAAAGGGAAGTGGATCACTCATTATACGGATGTTGAAAAGGTTCCTAGCTTGAAAATTGGGCAGTATGTTAGGTTCCGAGTTGGTTTGGTTGAACCCAGGTGGGGTTGGAGAGGAGCTCAGCCTGAATCTCAAGGTATTATAACAAGTATTCATGCGGATGGAGAAGTCAGGGTTGCATTCTTTGGTTTGCCAGGACTGTGGAAAGGTGATCCTTCAGACCTGCAGGCAGAACAAATCTTTGAAGTGGGAGAGTGGGTGAGATTGAAAGAAAATGCAAATAATTGGAAATCAATTGTGCCAGGTAGTGTTGGCGTCGTTCAAGGAATAGGGTATGAAGGAGATGAAACTGACAGAAGTACTTATGTTGGCTTTTGTGGGGAGCAAGAGAAATGGGTAGGACCAAGTTCCCATCTTGAAAGAGTTGACAAACTCTTTGCAGGACAGAAAGTTAGAGTTAAACAACATGTAAAACAACCTAGATTTGGGTGGTCGGGACACACCCATGCTAGTATTGGTACTATACAAGCAATTGATGCTGATGGAAAGCTTCGAATATACACTCCAGCAGGTTCAAAAACATGGATGCTGGACCCATCAGAAGTGGAGGTCGTGGAAGAGAAGGAGCTTTGTATTGGAGACTGGGTGAGGGTTAGAGCATCAGTTTCAACTCCAACCCACCACTGGGGGGAAGTGAGTCATTCAAGTGTTGGGGTGGTGCATCGGATGGAAGATGATAATTTATGGGTTTCATTCTGTTTTGTGGAGAGATTATGGCTTTGCAAGGCAAGTGAAATGGAACGGGTTAGGCCTTATAAAGTAGGGGACAAAGTAAGGATCAGAGATGGACTGGTATCGCCGCGGTGGGGATGGGGGATGGAGACACATGCCAGCAGGGGACAGGTTGTAGGAGTAGATGCAAATGGTAAACTAAGAATAAGGTTCCGTTGGAGGGAAGGTAGGCCTTGGATAGGAGACCCTGCTGATATTGCCCTTGATGAGAActaa 4878 0.452 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCRECLSRMFSASSDATLTCPRCRHVSTVGNSVLALRKNYAVLSLIHSAMEASAAGGGNRGSNFECDLTDDDEDGDGEDDDEDDEEKRRRNSRGSQTSSSGGCAPVIEVGVHQDLKLVKRIAEGRRAGVDMWTAVIGGGRCRHHVAVKKAVITEGMDLDWMLVKLEDLRRASMWCRNVCTFHGAMKVDESLCLVMDKCYGSVRSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDSNGHAVVSDYGLATILKKPSCWKARPECDSTKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISPESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRLVVKAKKQPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFNAMLAIFLRHLQEIPRSPPASPDNDLVKGSVSNVTEASPVPELEVHQDPNHLHRLVSEGDVAGVREFLAKAATENESNYMSSLLEAQNADGQTALHLACRRGSAELVETILEYEEANVDVLDKDGDPPLVFALAAGSHECVRSLIKRNASVRSRLRDGFGPSVAHVCAYHGQPDCMRELLLAGADPNAIDDEGESVLHRAIAKKFTDCALVIVENGGCRSMTILNSKNLTPLHLCVGTWNVSVVKRWVEVATSDEIAEAIDIPSPIGTALCMAAASKKDHESEGRELVRILLTAGADPSAQDSQNGRTALHTAAMTNDVELVQVILAAGVDVNTRNVHNSIPLHLALARGAKACVGLLLAAGADYNLQDDDGDNAFHIAAETAKMIRENLDWLIVMLKNPDADIEVRNHSGKTLRDILEALPREWISEDLMEALSNRGVHLSLTIFEVGDWVKFKRTVTTPTHGWQGARPKSVGFVQSVPDKDNLIVSFCSGEVHVLPNEVIKVVPLDRGQHVQLKGDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVPPFRIGDKVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLVIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSVGVIHSLEEDGDVGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVMQSVSQPRLGWSNESPATVGKIVRIDMDGTLNAKVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGNRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSLKIGQYVRFRVGLVEPRWGWRGAQPESQGIITSIHADGEVRVAFFGLPGLWKGDPSDLQAEQIFEVGEWVRLKENANNWKSIVPGSVGVVQGIGYEGDETDRSTYVGFCGEQEKWVGPSSHLERVDKLFAGQKVRVKQHVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKTWMLDPSEVEVVEEKELCIGDWVRVRASVSTPTHHWGEVSHSSVGVVHRMEDDNLWVSFCFVERLWLCKASEMERVRPYKVGDKVRIRDGLVSPRWGWGMETHASRGQVVGVDANGKLRIRFRWREGRPWIGDPADIALDEN 1625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00259 1625 CDD RING-HC_ScPSH1_like 5 52 - -
Tsu03g00259 1625 ProSiteProfiles Ankyrin repeat profile. 512 545 IPR002110 GO:0005515
Tsu03g00259 1625 Pfam Ankyrin repeats (many copies) 584 631 IPR002110 GO:0005515
Tsu03g00259 1625 MobiDBLite consensus disorder prediction 93 132 - -
Tsu03g00259 1625 Gene3D - 769 858 IPR036770 -
Tsu03g00259 1625 ProSiteProfiles Protein kinase domain profile. 143 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00259 1625 ProSiteProfiles Ankyrin repeat region circular profile. 512 534 - -
Tsu03g00259 1625 Gene3D - 580 639 IPR036770 -
Tsu03g00259 1625 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 2 1624 - -
Tsu03g00259 1625 MobiDBLite consensus disorder prediction 95 111 - -
Tsu03g00259 1625 Pfam Mind bomb SH3 repeat domain 868 913 IPR040847 -
Tsu03g00259 1625 Pfam Mind bomb SH3 repeat domain 1118 1236 IPR040847 -
Tsu03g00259 1625 Pfam Mind bomb SH3 repeat domain 992 1112 IPR040847 -
Tsu03g00259 1625 Pfam Mind bomb SH3 repeat domain 1244 1365 IPR040847 -
Tsu03g00259 1625 Pfam Mind bomb SH3 repeat domain 1371 1492 IPR040847 -
Tsu03g00259 1625 Pfam Mind bomb SH3 repeat domain 922 986 IPR040847 -
Tsu03g00259 1625 Pfam Mind bomb SH3 repeat domain 1501 1619 IPR040847 -
Tsu03g00259 1625 ProSiteProfiles Ankyrin repeat region circular profile. 760 792 - -
Tsu03g00259 1625 SMART ANK_2a 581 610 IPR002110 GO:0005515
Tsu03g00259 1625 SMART ANK_2a 469 498 IPR002110 GO:0005515
Tsu03g00259 1625 SMART ANK_2a 687 722 IPR002110 GO:0005515
Tsu03g00259 1625 SMART ANK_2a 614 645 IPR002110 GO:0005515
Tsu03g00259 1625 SMART ANK_2a 727 756 IPR002110 GO:0005515
Tsu03g00259 1625 SMART ANK_2a 760 789 IPR002110 GO:0005515
Tsu03g00259 1625 SMART ANK_2a 512 542 IPR002110 GO:0005515
Tsu03g00259 1625 SMART ANK_2a 649 680 IPR002110 GO:0005515
Tsu03g00259 1625 SMART ANK_2a 793 828 IPR002110 GO:0005515
Tsu03g00259 1625 SMART ANK_2a 546 575 IPR002110 GO:0005515
Tsu03g00259 1625 Pfam RING-type zinc-finger 6 49 IPR027370 -
Tsu03g00259 1625 Pfam Protein kinase domain 172 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00259 1625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Tsu03g00259 1625 ProSiteProfiles Ankyrin repeat region circular profile. 727 758 - -
Tsu03g00259 1625 Gene3D - 640 768 IPR036770 -
Tsu03g00259 1625 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Tsu03g00259 1625 Gene3D - 466 579 IPR036770 -
Tsu03g00259 1625 SUPERFAMILY Protein kinase-like (PK-like) 140 448 IPR011009 -
Tsu03g00259 1625 PRINTS Ankyrin repeat signature 513 528 IPR002110 GO:0005515
Tsu03g00259 1625 PRINTS Ankyrin repeat signature 709 723 IPR002110 GO:0005515
Tsu03g00259 1625 SUPERFAMILY RING/U-box 4 78 - -
Tsu03g00259 1625 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 2 1624 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Tsu03g00259 1625 SMART ring_2 6 51 IPR001841 -
Tsu03g00259 1625 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Tsu03g00259 1625 SUPERFAMILY Ankyrin repeat 507 804 IPR036770 -
Tsu03g00259 1625 Pfam Ankyrin repeats (3 copies) 706 791 IPR002110 GO:0005515
Tsu03g00259 1625 Pfam Ankyrin repeats (3 copies) 493 574 IPR002110 GO:0005515
Tsu03g00259 1625 ProSiteProfiles Ankyrin repeat profile. 760 792 IPR002110 GO:0005515
Tsu03g00259 1625 Gene3D Transferase(Phosphotransferase) domain 1 226 456 - -
Tsu03g00259 1625 ProSiteProfiles Ankyrin repeat profile. 727 759 IPR002110 GO:0005515
Tsu03g00259 1625 ProSiteProfiles Ankyrin repeat profile. 581 613 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00259 Tsu-Chr3 2087340 2099477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00259 205 426 MAP Kinase Kinase Kinase AT2G31800 30.531 1.35e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Tsu03g00259 Pkinase 7.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00259 K16279 - gmx:100777576 2985.28