Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00258 atGAATGTGTCAACATTTCCAGTAGTTGAAGGTGTTGAGAATTTGGTCAACAATATCCATGAAAATATTGTGCAACATGGACAGGAGGGTGTTGTTGATTATACACCACACTTGGATATGGAGTTTGAATCTGAAGTAGCGgcatatgaattttataatgaGTATAGTAGGAGAATTGGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGTAGAAAAGATGGGATTTTGACTTCAAGAAGATTCACGTGTTTTAAAGAGGGTAAACGGAGCGTTGACAAACGAGACCACTTGACAAAAGAGGGTAGGGCAGAAACTAGAACGGATTGTCAAGCACGTATGGTTATTTCACTTGATCGAAAGGTTGGAAAATACAAGGTTGTGGACTTTGTAGCTCAACATAATCACGCTCTTCAACTGCCGGGGTATGTTCATATGATTCGCTCTCATCGACGCTCACAGGCATCTCAAGTTGTAGTGGCTGATGAATCTGGATTAAAACAAGATTTTCAAGAATATGTGTCCAAGCATGATGAATCTGGATTAAAACAAGATTTTCAAGAATATGTGTCCAAGCATGATGATGGAATAGATATTATTGCTTATTCAGGACAAGAAATTAACAATTATCTTCCAACTAAAAGGATGCGGTCGCTAATGTATGGTGAAGTGGGTGCTTTGTTGATGCATTTCAAACGGCAAAGTGAAAATCCTTCATTCTATTATGACTTCCAAATGGATGTTGAAGAGAAAATAACAAACATATTTTGGGCGGATGCACAAATGATAAATGATTATGAATACTTCGGCGATGTCATCACTTTTGACACAACATACAAGTCAAATAAGGATTATCGGCCGTTGGGAGTATTTGCCGGACTAAATAATCACAAGCAAATGGTTGTTTTTGGTGCAACATTGCTATATGATGAAACAATCCCTTCTTTTCAATGGTTATTTGAAACTTTTCTCAAAGCAATGGGTGGAGAAAAGCCTAAAACCATTCTAACCGATCAAGATGCTGCAATGGCTAAGGCTATTTCTTTAGTTATGCCAGAATCATTTCATGGATTGTGCACGTGGCATATAAAAGAAAATGCCCTGAAGCATGTGAACCATCTATATCAAAAGAGTTCACAATTCTACTcagattttgaagcatgtattgatgTACATGAAGAGGAAGGTGAGTTTTTGAAAGCATGGAATGTTTTACTTGTTAAACATAACGTTTCTGAAGATTCATGGCTCCATATGATTTTTCAACTGAAGGAAAAATGGGCATGGGCgtacattaaaaataatttcactGCAGGTATGAGATCTACTCAATTAAATGAGAGTTTTAATGTTGAGATGAAAAATCATTTAAAGTCAGATTTAGACTTAGTGCAATTTTTCACACACTTTGAAAGGGTTGTCAATGGAATGCGGAACAATGAGTTAGAAGCCGATTATGAGTCTAGACATGAGTTGCCTAAACTGAAAATGAGAAGGGTTCCTATGCTTGTACAAGCTGGAAATATTTACACTCCAAAAATCTTTGAGGAATTTCAAGAAGAATATGAGGAATATCAAGGGACTTGCGTAAAGAATTTGAAAGAAGGGTTGTATGTTGTTACAAATTATGATAATAGTAAGGAGCGGATGGTAACAGGGAATCTTGTGGATCAAAAGGTTGCTTGTGACTGTCGTAAATTTGAGACACATGGCATCTTATGCAATCATGCTTTGAAAGTTTTAGATGTTATGAATATTAAGTTAATTCCTCATCACTATATACTGAAGCGATGGACAAGAGATGCAAGGTTGGGAAGTAATCGAGGTTGGAAACGGCAACGTGTTGAATTAGACATAAAAGCCAATTTTATGATGCGATGCGATGAGTTATGTCCTCAAATGGTTAAATTGACCAACAAAGCATCAAAGTCTCATGAAACTTACAcatttttgtccaaagtttATGAAGAgtcttataaaataattgatgatATGTTGGCCAAAAAGTTTGTGGGTGGAGAATCACTTGAAATGTGTCATGCATCTGTATCCATTGGCAACGAAAAAAATGACAACAATGTGGACACTGTTGATGTTGGTGGGGAAAATGAGTTGCGAATTCGAGGTGATGGTCTTGTGGATTCCCCGATGAAAATGGAAGAGTCATTGTTTCCTACTTCTCTCATACCGATACAGACATCTCATCATTATTTTCTAAAATGTTTAAAAGGGAAGTGGCTTTGCTTCAGCATCTCACCTCTCTTGAAAACATTGATTGAGATTTCAGATTGTCACCGACATGAATCATTACCAGAAGAGGGACTGCCTACCTCTCTTTCATTAATGACTATCAGGAGATGCCTTTTACTACAAGCAAACTGTCAAAGCAATGGAGTCAAAGAGTGGTCTAAGGTTGCACATATTCCATACATTATTACTGATAACAAATTGATAATATGA 2460 0.3561 MNVSTFPVVEGVENLVNNIHENIVQHGQEGVVDYTPHLDMEFESEVAAYEFYNEYSRRIGFGIRREYGNKSRKDGILTSRRFTCFKEGKRSVDKRDHLTKEGRAETRTDCQARMVISLDRKVGKYKVVDFVAQHNHALQLPGYVHMIRSHRRSQASQVVVADESGLKQDFQEYVSKHDESGLKQDFQEYVSKHDDGIDIIAYSGQEINNYLPTKRMRSLMYGEVGALLMHFKRQSENPSFYYDFQMDVEEKITNIFWADAQMINDYEYFGDVITFDTTYKSNKDYRPLGVFAGLNNHKQMVVFGATLLYDETIPSFQWLFETFLKAMGGEKPKTILTDQDAAMAKAISLVMPESFHGLCTWHIKENALKHVNHLYQKSSQFYSDFEACIDVHEEEGEFLKAWNVLLVKHNVSEDSWLHMIFQLKEKWAWAYIKNNFTAGMRSTQLNESFNVEMKNHLKSDLDLVQFFTHFERVVNGMRNNELEADYESRHELPKLKMRRVPMLVQAGNIYTPKIFEEFQEEYEEYQGTCVKNLKEGLYVVTNYDNSKERMVTGNLVDQKVACDCRKFETHGILCNHALKVLDVMNIKLIPHHYILKRWTRDARLGSNRGWKRQRVELDIKANFMMRCDELCPQMVKLTNKASKSHETYTFLSKVYEESYKIIDDMLAKKFVGGESLEMCHASVSIGNEKNDNNVDTVDVGGENELRIRGDGLVDSPMKMEESLFPTSLIPIQTSHHYFLKCLKGKWLCFSISPLLKTLIEISDCHRHESLPEEGLPTSLSLMTIRRCLLLQANCQSNGVKEWSKVAHIPYIITDNKLII 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00258 819 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 31 664 IPR031052 GO:0006355
Tsu03g00258 819 Pfam MULE transposase domain 272 366 IPR018289 -
Tsu03g00258 819 PANTHER OS03G0181600 PROTEIN 31 664 - -
Tsu03g00258 819 SMART 26again6 560 587 IPR006564 GO:0008270
Tsu03g00258 819 Pfam FAR1 DNA-binding domain 50 139 IPR004330 -
Tsu03g00258 819 ProSiteProfiles Zinc finger SWIM-type profile. 538 585 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00258 Tsu-Chr3 2081241 2084990 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu03g00258 MULE 1.1e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00258 - - cam:101500125 1071.23