Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00256 ATGAAGAAAACTTTTTCCACCAACAGCGCCACCCGGCGCGACTCATATTACCCCCGTCAACCACCGTCTCCCATCTTTCATCACCGGAGCGCCGGATTCCACCCCAACAACCGCCATCTCCCTACTCATCCCCGCCTCCCCACTTTTACCATAAACCTCCGTTTCAACCATCGTACTCACCGCCGTGACCTCCGCCGCGACGACCTGGAATCTctgataaaaaaatgcaaacCAAATCCCGACAATTTCACATTCAACACCAACGAAAGCATCGCCGTATCTCTCAATTTCAATCAGAAAACAGACGCGATCAACGCTGTCATTTGGTTCTGGCAATCACGCCTCTCAGTGAATTCAAACCGAATCCACGATTTCACGCCGGAGTTCATAACAAACTCCGACAATGTCGAACTCGATGTACGTCTTCGAAACTTGTTCGTCAGCCACGTGAAGGAATTAATGAATGGAAAAGAAGTGAATAGATGGATAGAAGAATGGGATCGATTATTAAAAGAGATTAATCATGTTAATAGCTTATTAAGTAAATCTTATCAAATTAGGGTTCAAGAAGAGAATATTGATAGAAAGAAAGTACTTGATGGTGAAAAGAATTTAATCGAAAGAAGATTAAAGGAATTCGAATCTGCTATGGAGTGTATTTTGAAGTATTTAGAAGAGAATggtgattatgattatgattatgatgatgttAATGTATTTAGGTTTGGTAAAAGTTTTGATTGGGagaagatttataatttaattgttaGGGAACGTTGTAGACTTGAAGAAGGTTTGCCTATTTATGCTTATAGGAGGGAAATTCTTCAGCAAATACATCATCAACAgATAACAGTGTTGATTGGAGAGACAGGTTCCGGGAAGAGTACTCAGATAGTGCAGTTTCTCGCTGATTCAGGGGTTGGGGCCAATAAGTCAATTGTATGCACTCAACCTCGCAAGATTGCTGCGAAATCATTGGCTGAAAGGGTCCAGGAGGAATGTGGCGGATGTTATGAAGACAATTCAATCAAGTGTTATTCTACGTTTTCATCTTGGAACAAGTTTGATTCCGGGATAACCTTCATGACAGATCACTGTTTATTGCAGCACTACATGAGCGATAAAAATTTGTCTGGGATCTCGTGTATTATAGTGGATGAGGCTCATGAAAGGAGTATAAACACCGATTTACTGTTGGCGTTGATAAAGAATTTACTTTGTAAGAGGGTTGAAATGCGGCTCATCATCATGTCTGCTACGGCTGATGCAAAGCAACTATCTGATTACTTTTATGATTGTGGAATTTTTCATGTCCTTGGGAGAAACTTCCCTGTGGAGGTGCGATATGTTCCTTCTGACTATGGAGGACGTTCTGGTTCTGCTGTTGTGGACTCATATGTTTCCGATGTTGTCAAAATGGCAACTGAAATTCACGTAGCAGAGAAAGAAGGAACTATTCTTGCCTTTCTTACCTCACAGTTAGATGTAGAATGGGCCTGTGAAAAGTTTGAAGCCCGCACTGCAGTTGCTTTGCCCTTGCATGGAAAACTTTCATCTGAAGAGCAATTTCATGTTTTCCGGGACTATCCTGGAAAAAGAAAAGTGATATTTTCAACGAATGTTGCAGAGACATCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGGTTGGTTAAAGATAGTCGCTTCGATCCTTGCAGTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTAATCAACGCGCTGGTCGTGCTGGGAGAACCGAGCCTGGTAGGTGCTATAGGCTGTACTCAGAAGCTGATTATCAATCTATGGAACTAAATCAAGATCCTGAGATCCGAAGAGTTCATCTCGGCGTAGCAGTTTTGAAGATCCTTGCTTTAGGGGTGAAGAATGTGCAGGATTTCGATTTTGTGGATGCTCCAAGCCATAGCTCTATTGAGAGGGCAATTAGGAATCTAATTCAATTAGGAGCCATTAAACTGAACAATAATGTTCATGAATTAACTTCTGAAGGCAGGCACTTAGCAAGACTGGAGATTGAACCTAGGCTTGGTAAACTCATTCTTGGCTGTTTCCAATATGCTTTGGGTAGGGAAGGCATTGCCCTTGCTGTCATGATGGCCAATGCTAGAAGCGTATTTTGCAGAGTTGGTAATGAAGGTGATAAACAAAGATCTGATTGTCTCAAAGTGCAATTTTGCCATTGCGATGGTGACCTTTTTACTCTTCTGTCTGTGTACAAGGAATGGGAAGCACTGCCTCAGGATATGAAGAATAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCTATGAGGAGATGCCAAAACACATTTTTGGAGTTAGAATCTTGTCTAGAGAATGAACTTCGCTTTGTTGTTCCAAGCTACTGGCGCTGGGACCCTCACACACCTTCTATTCATGATAAGAATATGAAAATGGCTATACTGTCCTCACTATCTGAAAATGTAGCCATGTACTCTGGACGCAGTCAGCTTGGTTATGAAGTAGCTCAAACTGGGAAACTTGTTCAATTACATCCATCATGTTCCTTGCTCATATTTGCCCAGAGGCCTAGTTGGGTGGTTTTTTATGAGCTCCGTTCAGAGTCTAATGAATATTTGTTCTGTGTGAGTGCTGTTGATTTTCAATCATTATACAGCCTTAAAACTCCTCCCTTGTTTGATGTATCCAAGATGGAAGAGCGGAAGTTGCAAATGAGGACATTGTCTGGGTTTGGAAAACATGTTCTCAAGAGATTTTGTGGAAAAGGAAATTTGCTAGGGCATGTTTCTCGTATTAGGAAAGCTTGTATGGATGAACGAATCTTTGTTGAAGTGAATTTTGACGATAACCATGTTCAGCTGTATGCCAGTTCACATGATGTGAATACAGCTAGTAAGTTGGTGAATGATGTTTTAGAATATGAGAAAAAGAGGTTATACAATGAATGTATGGAAAAATGTTTGTATCATGGGTCTGGTTCCTCATCACCTGTGGCTTTGTTTGGCTCTGGTGCGGAGATAAAGCATTTGGAACTTGAGAAGCATTCCTTGAGTGTTGATGTGTTTCACCCAAATGTAAATACAATTGATGAAATGGAGCTCCTGttgttttttgagaaaaatactTCTGGTTTTATATGTGACATGCACAAGTTCACAGGCATGGTGAAGGATGTTGAGGATAAAGAAAAATGGGGCAGGATAACATTTCTGACCCCCAATGCTGCCAAAAGAGCTGCTGAGCTGGATGGAGAAGAGTTTTGCAGCTCGCCCTTGAAAATAGTTCCTTCACAATCAGCTATGGGAGGGGGTAAAACATTTTCATTTCCTGCAGTTGAAGCAAGAATTTCTTGGCCTCGTAGGCCTACCAGAGCACTTGGCATGATTATATGTGATAAAAATGATGTCAACTTCATCTTGAGAGATTTTCATAACCTTATAATAGATGATAGATATATTCGTTGTGCACCCAACGATAAATATATGGACAAAATTATGATAAGTGGGCTTGACAAAGAGCTTCCCGAGACTGAAATTTTGGATGTACTAAGATCTGCTACAAGTAGAAGGAttcttgattttttctttttgagggGAGATCCTGTTGTAAATCCACCATGCAGTGTCATTGAAGAGGCACTCTTGAAAGAAATTTTACCCTTAATGCCCAAAAGGAACCCTCACATTAGTTCTTGCCGTGTTCAGGTGTTTCCGCCTAAGCCGAAGGATTATTTGATGAGTGCTTTAATTCATTTTGATGGAAGATTACATTTAGAGGCAGCGAAAGCTTTGGAGAGCATTGATGGAAAGGTGTTGCCTGGATGTCTTTCATGGCAGAAGATAAAGTCCCAGCAGTTGTTTCACAGCACCTTGATATTTTCTTCTCCAGTGTATCATGTGATTAAAGAACAACTGGAAAAAGTACTGGCAAGTCTTGAATGGAACCTAGACAGGACACCTAATGGTTCCCACCGAGTGAAGATAACAGCCAATGCCACAAAGACGGTGGCAGAAGGTAGGAGACCTCTGGAAGAACTGTGGAGAGGGAAAACCATTGTCCACGACAACCTCACCCCTTCCGTTCTACAGCTCATGTTGTCCAAAGATGGTTATAGTCTTACAAGCTCAATACAGCAGGTGACAGCAACTTACATTCAATTTGACAGGCGCAACCTGAATATACGGATATTTGGTTCTCCAGACAAAATTGCTTTGGCTGAGCAGAAGATAATTCAATCTCTCTTGTCCCTCCATGAAGAAAAGCAGTTAGTAATCCATCTGAGAGGGAGGGACCTACCTTCTGATTTAATGAAGCGAGTGGTTAAGAATTTCGGGCCAGATCTTCACAGACTGAAAGAGAAGGTACCTGGGGCAGATCTTAAGCTCAACACACGTGACCAGACAATCCTTCTTCATGGTAACAAGGAGTTCAAATCACGAGTAGAGGAAATAACTTTCGATATTGCACGTTTAAATCCTCATATAATCGATGACACTGGGCCTAGTTGTCCAATTTGCTTGTGTGAGGTTGAGGATGGATATCAACTTGAAGGCTGTGGTCATTTGTTCTGCAGGTCGTGTATGGTGGAGCAGTGTGAATCTGCTATAAAAAACCAAGGCAGTTTCCCAATACGCTGTGCTCATCAGGGATGTGGAGATCTTATTTTGCTTGCAGATTTCAGAACTCTCCTATCAAATGATAAGTTGGAGGAACTTTTTAGGGCGTCATTGGGAGCTTTTGTAGCATCAAGTTCAGGAACTTATAGGTTTTGCCCGTCTCCTGACTGCCCCTCAATCTATCGAGTTGCAGCTTCCGACACTGCTAGTGTGCCATTTGTTTGTGGGGCATGTTATTCAGAGACTTGTACCAGGTGCCACTTAGAGTATCATCCGTATGTTTCCTGTGAGAGATATCGAGAATTAAAGCATGACCCAGATTCATCATCTCTGAGGGATTGGTGCAAAGGGAAAGAACACGTCAAGTGGTGCTCGGCGTGTGGCCATGTAATTGAAAAGGTAGACGGGTGCAATCACATTGAATGCAAGTGTGGAAAACATATCTGTTGGGTTTGCTTGGAGTTCTTTACAAGCAGTGTTGAATGTTACGAGCACATGGACATACACGGTAACTTTCCATTTGCATTGAATTGTTTTACACCCAATTGGTCTGCCAAAACTGAAGAGCATAATTGTCCAAATATGAGAGGTCTTGTTTACTTGCAAAATGAAACTGCACCTGTCCAAATAAGTGCTGCTGCAGATGAAAATGTTTCGGCTTCTGACCTCACTGTTAGACTTGAGAAGATAGTAACTTATGAGAAGATTGAAGCTGTAATTAACACACTACCAATCTGTCTGGAAACGAGACTTTGGTATTGCCTCTACCTTCATTCAATGTTATCAATGGCTGTTCACATGAATGATCAAACAGAAGAACAAGTGTTTCATTCTTACAAAACTTACAGAAGCTAA 5502 0.4093 MKKTFSTNSATRRDSYYPRQPPSPIFHHRSAGFHPNNRHLPTHPRLPTFTINLRFNHRTHRRDLRRDDLESLIKKCKPNPDNFTFNTNESIAVSLNFNQKTDAINAVIWFWQSRLSVNSNRIHDFTPEFITNSDNVELDVRLRNLFVSHVKELMNGKEVNRWIEEWDRLLKEINHVNSLLSKSYQIRVQEENIDRKKVLDGEKNLIERRLKEFESAMECILKYLEENGDYDYDYDDVNVFRFGKSFDWEKIYNLIVRERCRLEEGLPIYAYRREILQQIHHQQITVLIGETGSGKSTQIVQFLADSGVGANKSIVCTQPRKIAAKSLAERVQEECGGCYEDNSIKCYSTFSSWNKFDSGITFMTDHCLLQHYMSDKNLSGISCIIVDEAHERSINTDLLLALIKNLLCKRVEMRLIIMSATADAKQLSDYFYDCGIFHVLGRNFPVEVRYVPSDYGGRSGSAVVDSYVSDVVKMATEIHVAEKEGTILAFLTSQLDVEWACEKFEARTAVALPLHGKLSSEEQFHVFRDYPGKRKVIFSTNVAETSLTIPGVKYVIDSGLVKDSRFDPCSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRLYSEADYQSMELNQDPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSHSSIERAIRNLIQLGAIKLNNNVHELTSEGRHLARLEIEPRLGKLILGCFQYALGREGIALAVMMANARSVFCRVGNEGDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPQDMKNKWCWENSINAKSMRRCQNTFLELESCLENELRFVVPSYWRWDPHTPSIHDKNMKMAILSSLSENVAMYSGRSQLGYEVAQTGKLVQLHPSCSLLIFAQRPSWVVFYELRSESNEYLFCVSAVDFQSLYSLKTPPLFDVSKMEERKLQMRTLSGFGKHVLKRFCGKGNLLGHVSRIRKACMDERIFVEVNFDDNHVQLYASSHDVNTASKLVNDVLEYEKKRLYNECMEKCLYHGSGSSSPVALFGSGAEIKHLELEKHSLSVDVFHPNVNTIDEMELLLFFEKNTSGFICDMHKFTGMVKDVEDKEKWGRITFLTPNAAKRAAELDGEEFCSSPLKIVPSQSAMGGGKTFSFPAVEARISWPRRPTRALGMIICDKNDVNFILRDFHNLIIDDRYIRCAPNDKYMDKIMISGLDKELPETEILDVLRSATSRRILDFFFLRGDPVVNPPCSVIEEALLKEILPLMPKRNPHISSCRVQVFPPKPKDYLMSALIHFDGRLHLEAAKALESIDGKVLPGCLSWQKIKSQQLFHSTLIFSSPVYHVIKEQLEKVLASLEWNLDRTPNGSHRVKITANATKTVAEGRRPLEELWRGKTIVHDNLTPSVLQLMLSKDGYSLTSSIQQVTATYIQFDRRNLNIRIFGSPDKIALAEQKIIQSLLSLHEEKQLVIHLRGRDLPSDLMKRVVKNFGPDLHRLKEKVPGADLKLNTRDQTILLHGNKEFKSRVEEITFDIARLNPHIIDDTGPSCPICLCEVEDGYQLEGCGHLFCRSCMVEQCESAIKNQGSFPIRCAHQGCGDLILLADFRTLLSNDKLEELFRASLGAFVASSSGTYRFCPSPDCPSIYRVAASDTASVPFVCGACYSETCTRCHLEYHPYVSCERYRELKHDPDSSSLRDWCKGKEHVKWCSACGHVIEKVDGCNHIECKCGKHICWVCLEFFTSSVECYEHMDIHGNFPFALNCFTPNWSAKTEEHNCPNMRGLVYLQNETAPVQISAAADENVSASDLTVRLEKIVTYEKIEAVINTLPICLETRLWYCLYLHSMLSMAVHMNDQTEEQVFHSYKTYRS 1833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00256 1833 SMART ha2_5 656 752 IPR007502 GO:0004386
Tsu03g00256 1833 Gene3D - 1641 1745 - -
Tsu03g00256 1833 SUPERFAMILY RING/U-box 1512 1585 - -
Tsu03g00256 1833 ProSiteProfiles Zinc finger RING-type profile. 1513 1556 IPR001841 -
Tsu03g00256 1833 SUPERFAMILY RING/U-box 1595 1651 - -
Tsu03g00256 1833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 760 IPR027417 -
Tsu03g00256 1833 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 821 896 IPR011709 -
Tsu03g00256 1833 SMART ibrneu5 1580 1645 IPR002867 -
Tsu03g00256 1833 SMART ibrneu5 1646 1711 IPR002867 -
Tsu03g00256 1833 Pfam Helicase conserved C-terminal domain 479 595 IPR001650 -
Tsu03g00256 1833 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 470 636 IPR001650 -
Tsu03g00256 1833 MobiDBLite consensus disorder prediction 1 27 - -
Tsu03g00256 1833 Pfam IBR domain, a half RING-finger domain 1589 1645 IPR002867 -
Tsu03g00256 1833 Pfam Zinc finger, C3HC4 type (RING finger) 1513 1544 IPR018957 GO:0046872
Tsu03g00256 1833 ProSitePatterns Zinc finger C2H2 type domain signature. 1698 1718 IPR013087 -
Tsu03g00256 1833 Pfam Helicase associated domain (HA2) 657 751 IPR007502 GO:0004386
Tsu03g00256 1833 SUPERFAMILY RING/U-box 1667 1714 - -
Tsu03g00256 1833 Gene3D - 443 615 IPR027417 -
Tsu03g00256 1833 MobiDBLite consensus disorder prediction 1 16 - -
Tsu03g00256 1833 SMART helicmild6 498 596 IPR001650 -
Tsu03g00256 1833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1509 1589 IPR013083 -
Tsu03g00256 1833 SMART ultradead3 264 449 IPR014001 -
Tsu03g00256 1833 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 382 391 IPR002464 -
Tsu03g00256 1833 PANTHER ATP-DEPENDENT RNA HELICASE 1544 1637 - -
Tsu03g00256 1833 CDD DEXHc_RHA-like 283 439 - -
Tsu03g00256 1833 PANTHER ATP-DEPENDENT RNA HELICASE 92 1475 - -
Tsu03g00256 1833 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 276 440 IPR014001 -
Tsu03g00256 1833 CDD SF2_C_RHA 444 604 - -
Tsu03g00256 1833 ProSiteProfiles TRIAD supradomain profile. 1509 1724 IPR044066 -
Tsu03g00256 1833 Pfam DEAD/DEAH box helicase 272 427 IPR011545 GO:0003676|GO:0005524
Tsu03g00256 1833 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 92 1475 - -
Tsu03g00256 1833 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1544 1637 - -
Tsu03g00256 1833 Gene3D - 640 744 - -
Tsu03g00256 1833 ProSitePatterns Zinc finger RING-type signature. 1529 1538 IPR017907 -
Tsu03g00256 1833 Gene3D - 255 442 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00256 Tsu-Chr3 2063748 2072419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00256 1529 1705 C3H Transcription Factor Family AT2G31770 27.174 1.60e-13 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00256 K12818 - gmx:100810008 2443.69