Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00252 ATGGCAGAGTGGGTTGTTGAGggatttctttcttctttcggtgaatatatttttcaaagcTTGATTTCAAGTAATTTGAGAGACTATTTTCGTAGAGTCAaacttgatgatttggtggaaGAACTTGAGTCTACACTCGATTCTATCAACCAAGTGTTAGATGATGCTGAGATCAAGCAATACCAAATTCCAAAAGTCAAGAAGTGGCTTGGTGATGTTAAACATGCTATGTATGAGGCTGATCAACTACTTGATGAGATTGCTACTGATGCACCACTCAAGAAGCTGAAGGCTGAATCTCAACCTTCTACTAGCCATAATATTGTCAACTTCATTCCAACTCTTACTAATCCATTTAAATCCAGGATcaaagaattgataaagagccTGCATTCTCTTGTAGAGCAGAAGGATGAACtgcaattgaaaaataaaacgTATGCCGGTAATGCAGTTGGATTCAATTCGAAACCTCCAGGAATAGAAGAAACTACATGTTTGGTGGATGCATCTGGCATATATGGTAGAGACGGTGATAAAGAAGAAATGATCAAAATTTTACTTTCTTCAGAGAATGGTAGCAGCAACCAGACACCTATAATCAGCATAGTTGGTTTGGGTGGGATGGGCAAGACCACCTTTGCTAAGCTTGTGTACAATGACAACATGATAGTGGAGCATTTTGAACTTAAAGCTTGGGTCTATGTTTCAGAATCTTTTGATGTTGTTGGACTCACCAAAGAGATTCTCAAGACATTTAATTCTTCAGCAGATGGTGAATCAAATTTAAATCTACTCCAACTGCGGCTGCAACAAACACTAACCGGCAAAAAGTATCTGCTTGTTTTGGACGACATTTGGAATGGAAATGAGGAAAGTTGGGAGAAGTTACTACTTCCCTTTAACCATGGATCTTCTGGAAGCAAGATTATTGCGACAACGCGTGACAAGGACATAACCTATGTCCTGAAATCCTGCAAGTTATTTCATTTACAACAATTGAATGAAAGTGATTGTTGGAGTTTATTTGTGACACATGCGTTTGATGGAAAGAATGTAGATGAATATCGACATCTTGAACCAATTGGCAAGAAAATAGTCGACAAGTGTGTAGGATTGCCTTTAGCTGTAAAAACACTGGGCCAACTCTTGCGAAGAAAATTCTCTGAACATGAATGGAGGAAGATATTAGAGACTGATATGTGGCGATTATCAGATGAGGACAATAACATTAATCCAGTGCTGAGATTGAGTTACCATAATCTCCCATCTAATCGGAAGCGTTGTTTTGCTTATTGTTCTATACTTCCCAAAGGTTATGGCTTTGACAAAGGTGGATTAATCAAGTTTTGGATGGCAGAAGGTTTGTTGAAGTGTTCCGGATCAGACAAAAGTGAAGAAGAGGAGTTGGGTAATGAAATTTTCAGCGATCTTGAGtcaatttcatttttccaaAAATCATCTTCCTACTTTGTGATGCATGATCTTGTGAATGATTTAGCAAAATCAGTGTCAGGAGAATTTTGTATGCAAATAGAGGGTTCTAGGGTGGAAGGTATCCCTGAAAGAACACGTTACATTCGGCTGTCtcttgaaaatttaaattgtgGTGATAAATTACTAGAGTCAATTTGTGAGTGCAAGGGACTACGTAGTCTGATAGTAGAATGCCACACAACTACGTTGATAAGCGACAATGTGCAACGTGATCTGTTTTCAAGACTAAAATGTTTGCGGATGTTATCATTTAGATATTGTGATCTCTCGGAGCTAGTTGATGAGATAggcaatttaaaacttttgcgTTATCTAGACCTTTCTTACAATAGTTTTACAACCTTACCTGATACCATATGTAAATTGTATAATTTGCAAACACTCTTGTTGAAAGGGTGTGATCAATTGACAGAGCTCCCTTCAAATTTTTCCACACTCATCAATTTACAGCATCTTGAACTCAGTTGTATAAAAAAGATGCCAAAGAATATAGGAAAGTTGAACAAACTTCAGTCCTTGACTTACTTTATTGTGGAAGAGCAGTACGGATCTGTTCTTAAGGAGTTGGAGAAACTAAACCATCTTCATGGAAGAATTGATATTAAAGGACTGGGTAATGTCATTGATCCTGCAGATGCTGCAACAGCCAATTTGAAAGATAAGAAGTATTTAGAAGAATTACATATGAAATTCAATGATAATAGAGAGGAAATGAATGACTCAGTTGTTGAAAGAAATATATCTGTCTTGGAGGCTCTTCAACCAAATAGCAACTTGAAAAGGCTCACCGTTGAATACTACAATGGCAACTCTTTTCCAAATTGGTTAAGGGGTTGTGATTTACCCAACTTAGTATCTCTTAATCTGCAGAAATGTGGATTATGTTCTTATTTGCCGCCACTTGGGTTTCTTTTGCTTAAAGAGCTTTATATAAGTGAATGTCCCGAATTGAAAAGGGTTTTGCCTCAACACCTTCCTTCTTTACAAAAATTAGAGATAAGTGATTGCAACAAGTTGGAGGAATGTTTATGTCTTGAAGGATCTCCTTTACTTGAAGATGTTTCTATAAAAAAGTGTTCCAAATTGAAAAGGGCCCCCTTGCCTCAACATCTTCCTTCTTTACAAAAATTGAAGATTACTGATTGTGAAATGTTGGAGATATCAATTCCTAAGGGTGATAGTATGATAGAGTTAGATCTACGGAGATGTGATCGGATTTTGTTGGAATCATTTCCAAGGGGAGGTTTGCCTCCCAACTTGAGTTGGCTTAGAATAGAGAAATGCCCAAAACTGATTGGTTCGAGAGAGGAGTGGGGTTTGTTCCAACTCAATTCTTTGATATGTTTCTCAATTAGAGATCATGAGTTTGAAAACGTGGAGTCCTTCCCAGAGGAGAATCTGCTGCCACCAACTCTGAAGTTGCTTTCTTTGAATAATTGTTCAAAGCTAAGAATAATGAACTACAAGGGTTTTCTCCACCTCAATTCTCTTGACAGGCTAAATATTTACAACTGCCCTAGTCTTGAGAGCTTGCCAGAGGAGGGTCTTCTCCACCTCAATTCTCTCTATTGTCTATCTATTGACAACTGCCCTAGTCTTGAGAGCTTGCCAGAGGAGGGTCTTCTCCACCTCAAATCCCTTGCTACTTTGTTTGGATCGACCAATTACAAGGGtgctgaaaaaaaaaaagaggtagAAGAAGAGGAGGGACTCAAAGTTCAAAGAGGGCAAAGACCAAGAAATGAGTCAACGCAACAATGTTTGTCCGCGATCGTTGAGTATGACTCATAG 3288 0.365 MAEWVVEGFLSSFGEYIFQSLISSNLRDYFRRVKLDDLVEELESTLDSINQVLDDAEIKQYQIPKVKKWLGDVKHAMYEADQLLDEIATDAPLKKLKAESQPSTSHNIVNFIPTLTNPFKSRIKELIKSLHSLVEQKDELQLKNKTYAGNAVGFNSKPPGIEETTCLVDASGIYGRDGDKEEMIKILLSSENGSSNQTPIISIVGLGGMGKTTFAKLVYNDNMIVEHFELKAWVYVSESFDVVGLTKEILKTFNSSADGESNLNLLQLRLQQTLTGKKYLLVLDDIWNGNEESWEKLLLPFNHGSSGSKIIATTRDKDITYVLKSCKLFHLQQLNESDCWSLFVTHAFDGKNVDEYRHLEPIGKKIVDKCVGLPLAVKTLGQLLRRKFSEHEWRKILETDMWRLSDEDNNINPVLRLSYHNLPSNRKRCFAYCSILPKGYGFDKGGLIKFWMAEGLLKCSGSDKSEEEELGNEIFSDLESISFFQKSSSYFVMHDLVNDLAKSVSGEFCMQIEGSRVEGIPERTRYIRLSLENLNCGDKLLESICECKGLRSLIVECHTTTLISDNVQRDLFSRLKCLRMLSFRYCDLSELVDEIGNLKLLRYLDLSYNSFTTLPDTICKLYNLQTLLLKGCDQLTELPSNFSTLINLQHLELSCIKKMPKNIGKLNKLQSLTYFIVEEQYGSVLKELEKLNHLHGRIDIKGLGNVIDPADAATANLKDKKYLEELHMKFNDNREEMNDSVVERNISVLEALQPNSNLKRLTVEYYNGNSFPNWLRGCDLPNLVSLNLQKCGLCSYLPPLGFLLLKELYISECPELKRVLPQHLPSLQKLEISDCNKLEECLCLEGSPLLEDVSIKKCSKLKRAPLPQHLPSLQKLKITDCEMLEISIPKGDSMIELDLRRCDRILLESFPRGGLPPNLSWLRIEKCPKLIGSREEWGLFQLNSLICFSIRDHEFENVESFPEENLLPPTLKLLSLNNCSKLRIMNYKGFLHLNSLDRLNIYNCPSLESLPEEGLLHLNSLYCLSIDNCPSLESLPEEGLLHLKSLATLFGSTNYKGAEKKKEVEEEEGLKVQRGQRPRNESTQQCLSAIVEYDS 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00252 1095 SUPERFAMILY L domain-like 492 883 - -
Tsu03g00252 1095 MobiDBLite consensus disorder prediction 1058 1087 - -
Tsu03g00252 1095 PANTHER DISEASE RESISTANCE PROTEIN RP 32 1012 IPR044974 GO:0006952
Tsu03g00252 1095 Coils Coil 35 59 - -
Tsu03g00252 1095 Gene3D - 164 328 IPR027417 -
Tsu03g00252 1095 Gene3D Ribonuclease Inhibitor 891 1067 IPR032675 -
Tsu03g00252 1095 SMART LRR_typ_2 598 621 IPR003591 -
Tsu03g00252 1095 SMART LRR_typ_2 780 804 IPR003591 -
Tsu03g00252 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 433 IPR027417 -
Tsu03g00252 1095 SUPERFAMILY RNI-like 781 1054 - -
Tsu03g00252 1095 Coils Coil 123 143 - -
Tsu03g00252 1095 Gene3D - 333 418 IPR042197 -
Tsu03g00252 1095 Pfam Rx N-terminal domain 29 98 IPR041118 -
Tsu03g00252 1095 Gene3D Ribonuclease Inhibitor 505 890 IPR032675 -
Tsu03g00252 1095 PRINTS Disease resistance protein signature 200 215 - -
Tsu03g00252 1095 PRINTS Disease resistance protein signature 273 287 - -
Tsu03g00252 1095 PRINTS Disease resistance protein signature 822 838 - -
Tsu03g00252 1095 PRINTS Disease resistance protein signature 370 384 - -
Tsu03g00252 1095 Pfam NB-ARC domain 179 420 IPR002182 GO:0043531
Tsu03g00252 1095 Gene3D - 17 140 - -
Tsu03g00252 1095 MobiDBLite consensus disorder prediction 1058 1075 - -
Tsu03g00252 1095 Gene3D - 419 504 IPR036388 -
Tsu03g00252 1095 PANTHER OS05G0414200 PROTEIN 32 1012 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00252 Tsu-Chr3 2027394 2033099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00252 172 387 WRKY Transcription Factor Family AT5G45050 28.761 4.59e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00252 - - mtr:MTR_3g027470 1066.6