Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00247 ATGCCTTCCAAAACTAACCTAaacgaaaaagaagaaaaatcacCATACAAagtagaagatgaagacgatgacgaagaagtagaagaagaagaagtatgGGATGATTGGGAAGGAGATGAAGGAGATTCTGAATTCATCTGTCTCTTTTGTGATTCCAGTTTCACTTCCTCCACTTCTTTGTTTCAACATTGTTCTTCAATTCACCACTTTGATTTTCATGCTGTTACCAATTCTCTCCACTTGGATTTCTATGCTTCCTTCAAGCTCATCAATTACATTCGCTCTCAGGTGGCGGAGAGCAGATGTTGGAGTTGTGGGTTAGCTTGTCAGTCCAAACATGATTTGCAGAATCACTTGCATGATGTAACTGACTTCAATAGTATTAAGCCTTTGTGGGATGATGATAGATATCTAAAACCTTTCATGCAAGATGATTCATTACTGTACAACTTTGGTGAATTTGAAGAAGGTGAAGATGAACAAACTTCAGTCATGGATGAAGATCTTGTGAGGGATTTGAAGAATGCAATTTACGGTGATGATCAAGATGCCGTGAAAAAATTGGTAGTCAATGAGACAGCTTCTGTTTCAGATGATCAGTCAAGCTTGCCTAGTTCTTCAAATAAGGAACTTGTTAATGGGAAGGACTCAAGAGGATGCATTTCATCAATTGATAAGGATCCAGAAGAAGGGTCTTTGATGGGTAATCCTCAGAATCACATTGCAACACATATTAGGAAGGTCAATGAAAGTTATTTTGGGTCTTACAGTTCATTTGGCATCCATCGAGAGATGTTAAATGATAAGGCTAGAATGGATGCTTATGGCCACGCAATTTTGAAGAATCCCTCTCTGCTAAATGGTGCTGTGGTTATGGATGTAGGTTGTGGAACTGGCATCCTCAGccTTTTTTCAGCTCAAGCAGGGGCTTCAAGGGTCATTGCAGTTGAGGCTAGTGCCAAGATGGCAGCAGTGGCAACTCAGGTTGCAAAAAATAACGGTCTCTTGCtgagtaaaagtgaaactagCGTCAATGGCAACAACAAAGGAGTCGTAGAAGTGGTTCATGGCATGGTTGAGGAAATTGACAAAATTGTTGAACTTCAACCTCACAGTGTTGATGTATTGTTAAGTGAATGGATGGGGTATTGCTTGCTGTATGAATCCATGCTCGGCTCAGTTCTTTATGCACGTGACCGGTATTTGAAGCCTGGGGGTGCCATTCTTCCCGACACAGCAACTATTTTTGTTGCAGGATTTGGGAAAGGAGGTACAAGCCTTCCATTTTGGGAGAATGTGTGTGATTTTGACATGTCTTGCATTGGGGAGGAGCTTGTCACAGATGCTGCCCGTTATCCTATAGTTGATGTCATAGACCATCAAGATTTAGTTACCAGTTCTACTATTCTTCAGACCTTTGACTTGGCTACCATGAAGCCCGATGAAGTGGATTTCACTGCAACAGCTTCTTTGGAACCAAAATTGAGTGCTTCAGAAGATGAAAAAACACATTTGAATTCTAAAACATGTTGCTGGTGCTATGGAGTTGTCTTGTGGTTTGATACTGGATTTACAACCAGATTCTGTAGGGAAACACCAACTGTGCTTTCAACATCCCCTTATACTCCAAAAACACATTGGTCACAGACAATATTAACCTTTCGGGAACCCATTGCCATTGGATTAGGCAAAGAAAACGGGAGAAATTCAGAAACGATTGGCACTGAAGGCTACCCTGCCGTGAAGATTGATCTGCGTGTCAGCATTGTCCGCTCTACTGAGCATCGCAGCATCGACATTTCCATGGAAGCTGCTGGTGTTGCTCCCAATGGTCATAGACGCAGTTGGCCAGCTCAACTTTTTTCACTGCAGTAG 1875 0.4011 MPSKTNLNEKEEKSPYKVEDEDDDEEVEEEEVWDDWEGDEGDSEFICLFCDSSFTSSTSLFQHCSSIHHFDFHAVTNSLHLDFYASFKLINYIRSQVAESRCWSCGLACQSKHDLQNHLHDVTDFNSIKPLWDDDRYLKPFMQDDSLLYNFGEFEEGEDEQTSVMDEDLVRDLKNAIYGDDQDAVKKLVVNETASVSDDQSSLPSSSNKELVNGKDSRGCISSIDKDPEEGSLMGNPQNHIATHIRKVNESYFGSYSSFGIHREMLNDKARMDAYGHAILKNPSLLNGAVVMDVGCGTGILSLFSAQAGASRVIAVEASAKMAAVATQVAKNNGLLLSKSETSVNGNNKGVVEVVHGMVEEIDKIVELQPHSVDVLLSEWMGYCLLYESMLGSVLYARDRYLKPGGAILPDTATIFVAGFGKGGTSLPFWENVCDFDMSCIGEELVTDAARYPIVDVIDHQDLVTSSTILQTFDLATMKPDEVDFTATASLEPKLSASEDEKTHLNSKTCCWCYGVVLWFDTGFTTRFCRETPTVLSTSPYTPKTHWSQTILTFREPIAIGLGKENGRNSETIGTEGYPAVKIDLRVSIVRSTEHRSIDISMEAAGVAPNGHRRSWPAQLFSLQ 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00247 624 Gene3D Vaccinia Virus protein VP39 241 410 IPR029063 -
Tsu03g00247 624 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED 19 622 - -
Tsu03g00247 624 SUPERFAMILY beta-beta-alpha zinc fingers 28 161 IPR036236 -
Tsu03g00247 624 MobiDBLite consensus disorder prediction 18 36 - -
Tsu03g00247 624 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 249 576 IPR025799 GO:0016274|GO:0018216
Tsu03g00247 624 Gene3D - 413 616 - -
Tsu03g00247 624 MobiDBLite consensus disorder prediction 196 213 - -
Tsu03g00247 624 MobiDBLite consensus disorder prediction 196 235 - -
Tsu03g00247 624 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 68 IPR013087 -
Tsu03g00247 624 Pfam C2H2 type zinc-finger (2 copies) 47 121 IPR041661 -
Tsu03g00247 624 MobiDBLite consensus disorder prediction 1 36 - -
Tsu03g00247 624 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 19 622 IPR025799 GO:0016274|GO:0018216
Tsu03g00247 624 CDD AdoMet_MTases 291 409 - -
Tsu03g00247 624 Pfam Methyltransferase domain 291 406 IPR041698 -
Tsu03g00247 624 MobiDBLite consensus disorder prediction 1 17 - -
Tsu03g00247 624 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 255 563 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00247 Tsu-Chr3 2008680 2012791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00247 21 623 C2H2 Transcription Factor Family AT3G12270 55.134 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00247 K11436 - gmx:100781879 871.307