Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00246 ATGGGTCGCGGAAGAATATCCATGGAACTCATTCAAAAGGAGAAatcaagaaagataacatttcaAAAGAGAAAGACGGGATTACTAAAAAAAGTGAAGGAATTTGCCATTCTTTGTGATGTCAATGTTTGTGTAATTCTCTATGCTCCCAAATTTGAAGGTCAAGGATATGATAAACCTGAAACATGGCCTGAAGACACAAGAGATGTACAAAGAATCCTTAAAAAGTACTACAACGCAACAATGGATCGTCGTCCTAAGATCTACGATGCTCAAGAGTATTTCAAAGAAAGGATGAAAAAAGTTGAATTTGATATTTCCAAAGTGCGCAAAGAGATGTTAAGGATCACGTATCCAACTTGGGATGAATCTTTCAATTCTCTTGGAGAGGAACAAATGAGGTTGTTTGCTAGCAAGTTGGATGCTAAGCTTGATGCTTGTAATCTAAAGATGAATATGCTAAGAGGAGAtgttaagggaaaaaaaatagcTCATGAATCACACAAGGTTGATAAACCTAATACTCCCTATTGGACCTCAACTCCAAATAGTTACATCAATCTCATGCAAAACAACATGTCTCAAGCACAAATTTACCCTCCACTGATGAATATTAGTGACAAAAGCCCCTTAGGATTTTGGTCACTTCAAGTAGGACAAAGCTCTCAATCGTCTTCTTCGACACTTAGTGCACAAGGTTCCTACCAGATGAAGTCTGATGAGGGTAGATATACACAATCTTACCTCTACCAGCAAGTTGATAATAGTTGGACTAAATGGACCAGTCATGTTGATGCTAATATTTTCTTGGATCGAAAAACCGATATAAAAAAGAAGGATGAAGCTGAATATGTTGAAAATTTATCACCATACTATTACAATGGAAATCCAATGACAATGCAATCATATCCTCTTGGTATGCAAACTCTTCCTTTCCAAAATCTTCCAAACCTACCACCACATGGATATCAACTTAATGGATTCTATGATATGGATATTCTTCAAGCTCATATGTTCAACAACTACATGGATGGAAGGAAGTACCCATAA 1050 0.3552 MGRGRISMELIQKEKSRKITFQKRKTGLLKKVKEFAILCDVNVCVILYAPKFEGQGYDKPETWPEDTRDVQRILKKYYNATMDRRPKIYDAQEYFKERMKKVEFDISKVRKEMLRITYPTWDESFNSLGEEQMRLFASKLDAKLDACNLKMNMLRGDVKGKKIAHESHKVDKPNTPYWTSTPNSYINLMQNNMSQAQIYPPLMNISDKSPLGFWSLQVGQSSQSSSSTLSAQGSYQMKSDEGRYTQSYLYQQVDNSWTKWTSHVDANIFLDRKTDIKKKDEAEYVENLSPYYYNGNPMTMQSYPLGMQTLPFQNLPNLPPHGYQLNGFYDMDILQAHMFNNYMDGRKYP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00246 349 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu03g00246 349 PANTHER MADS BOX PROTEIN 3 225 - -
Tsu03g00246 349 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu03g00246 349 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 225 - -
Tsu03g00246 349 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Tsu03g00246 349 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu03g00246 349 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Tsu03g00246 349 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Tsu03g00246 349 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu03g00246 349 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu03g00246 349 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00246 Tsu-Chr3 2006612 2007661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00246 1 226 Type I MADS-box Gene Family AT5G55690 29.694 9.55e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu03g00246 SRF-TF 6.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00246 - - mtr:MTR_1g114730 436.417