Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00240 ATGATGAAAGAAACCAAGTCAATCAATAACCTAAGTTTCATGAATCGCTGCATTAGGAAGAAAAGGAGTTCCATAGTTtcaaagatgaaaagaaaagtaAGTGACCTTTACTTGATGGATTTCAGTCCCGATGAACATGAAGCAGCTGATGGTCTTGTTTTATTACAAACTCTATTTCTAAAGAAGCAGAATGTTAGGAAACTGAAAATCACTATTGGAGGCAAAAAGATTTGTGAAAAAACCTACAACAACAATGTTCTTTCGGTCACTTCAAAAAATAAGGTTGGTTCATCTCCACAAACTATTGTTCCTAATGTTGTTATGGCGAATGAAAACAACCCTTCAAATATACCAACGATTCCTGGCGTGCAGAACAATAATATTCTTGGATGTTGCAAACCTTTTGAGAAGAAACTATCAACGAGTGATTTGAAGGTGGATCTAAATCGACTATTTTTGGACAAGGGCCatgtgaaaaaatattttttacccTTGTTGAAAGAAGACGAAGATCTTGAAGAAGGAATAGATGTCGTCGTATATGACATGCAAGGCAAAACGTTCAACATGAAGTTTAAATTTTGGAGTGGAAAATTTTATGTCCTCAATGGAGGGTGGAAAACTTTCTTCAAATCGCATTCTTTGCTAGCAAATCAAGATCATGTTAAAGTGTGGATGTTTCGTCATTCTGAAACCGGCAATTTATGTTTTGCTCTTAGTGTGAGAAGAATGTAG 735 0.3401 MMKETKSINNLSFMNRCIRKKRSSIVSKMKRKVSDLYLMDFSPDEHEAADGLVLLQTLFLKKQNVRKLKITIGGKKICEKTYNNNVLSVTSKNKVGSSPQTIVPNVVMANENNPSNIPTIPGVQNNNILGCCKPFEKKLSTSDLKVDLNRLFLDKGHVKKYFLPLLKEDEDLEEGIDVVVYDMQGKTFNMKFKFWSGKFYVLNGGWKTFFKSHSLLANQDHVKVWMFRHSETGNLCFALSVRRM 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00240 244 SMART B3_2 135 230 IPR003340 GO:0003677
Tsu03g00240 244 Gene3D - 135 244 IPR015300 -
Tsu03g00240 244 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 31 244 IPR005508 GO:0003677
Tsu03g00240 244 Pfam B3 DNA binding domain 135 218 IPR003340 GO:0003677
Tsu03g00240 244 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED 31 244 - -
Tsu03g00240 244 CDD B3_DNA 135 243 IPR003340 GO:0003677
Tsu03g00240 244 ProSiteProfiles B3 DNA-binding domain profile. 136 243 IPR003340 GO:0003677
Tsu03g00240 244 SUPERFAMILY DNA-binding pseudobarrel domain 135 237 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00240 Tsu-Chr3 1951205 1951939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00240 133 239 B3 DNA Binding Superfamily AT4G03170 45.370 3.03e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu03g00240 B3 4.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00240 - - mtr:MTR_3g013810 186.422