Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00232 ATGGCATCAATGTCAGCATCTGGTTCATGGAGTGCTAAGGACAACAAAGCATTTGAAAGGGCATTAGCTGTTTTTGATAAGGACACGCCCGATCGTTGGTCGAATGTTGCTCAAGCTATTGGTGGAGGTAAGACTCCTGAAGATGTTAAGAGACACTATGAACTTCTTCTTAGGGATATTAGGCACATTGAATCAGGTCAAGTTCCTTTCCCAAATTACAAGAATGTTGGAAGCTTTGATGAGGAGAAAAGGATGAGAAACCTAAAGCTCCAGTGA 276 0.4203 MASMSASGSWSAKDNKAFERALAVFDKDTPDRWSNVAQAIGGGKTPEDVKRHYELLLRDIRHIESGQVPFPNYKNVGSFDEEKRMRNLKLQ 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00232 91 ProSiteProfiles SANT domain profile. 5 61 IPR017884 -
Tsu03g00232 91 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 2 91 - -
Tsu03g00232 91 CDD SANT 9 57 IPR001005 -
Tsu03g00232 91 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 91 IPR044636 GO:0003700
Tsu03g00232 91 SUPERFAMILY Homeodomain-like 8 65 IPR009057 -
Tsu03g00232 91 SMART sant 6 59 IPR001005 -
Tsu03g00232 91 Pfam Myb-like DNA-binding domain 8 54 IPR001005 -
Tsu03g00232 91 Gene3D - 2 70 - -
Tsu03g00232 91 ProSiteProfiles Myb-like domain profile. 8 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00232 Tsu-Chr3 1887768 1888916 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu03g00232 Myb_DNA-binding 1.8e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00232 - - gmx:100804396 152.91