Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00227 ATGCTAAGTGGATGGAGTTATGATGTGTTCCTTAGTTTTAGAGGTGAAGATACAAGAAGAAGTTTCACAGGCTCTCTCTATCATGGTTTATGCCAAAAGGGTATCAATGTTTTCATAGATGATGAAGAGCTTAGAAGAGGAGAACAAATATCTCCATCTCTTCTTACAGCTATTGAAGAATCTAGAATTTCTATCATTGTGTTTTCTACAAACTATGCATCCTCAAGTTGGTGTCTTGATGAGCTTGTTAAGATTCTTGAGTGTTGGAGAACAAAGGGACAATTAGTTTTTCCAGTTTTCTACTATGTTGACCCTTCTTTTGTAAGGCATCAAAGAGGAAGTTTTGGAACAGCTATGGCTAAACATGAAGTTACATTCAAGGATGATGTTGAAAGGTTGAAGAAGTGGAAAAAAGCCTTGTTTGATGCAGCCAATTTTTCTGGTTGGAGCTTAGAAAATGGGTATGAATTTGAGCTTATCATAAGGATCATTGAGGAGGTCTCTAGCAAATTAAATCACACCCTTTTGCATATTGCTGAGCATCCAGTTGGACTAGAAACTCGCATATCAGAAGTGAAATCACTTTTGCAAACTGAAAATCTTGGTGAAGAAGTTTCTTTCATTGGAATCCATGGACTTGGAGGTATAGGAAAAACAACAATTGCAAGAGCATTGTACAACTCAATTGCTAATCAATTTGATGCCGCAAGTTTCCTTACTGATATAAGAGAAAGTTCAACACAAAGACAAGGATTAGTTCAACTTCAAGAAACACTTCTTTATGAAACACTTGGTATAAAGAATATTATGCTAGGAAATGTTTATAAAGGTATCCCTATTATAAAAAAGAGATTATGTGGCAAAAAAGTGCTTCTGattcttgatgatgttgacaAATTGGAACAACTTCAAGCATTAGCAGGAGGACGCGATTGGTTCGGTTTAGGAAGTAAAATAATCATAACAACAAGAGATAAGCAATTATTAGCTAATCATCAAGTTGACAAAACTTATGAAGTAAAGAAACTAAATCATGAAGAAGCTTTTGAACTTTTTACATGGAATGCATTCAAAAGAAAAGCAACTAATGAGGGCTATATGGAGATTTCCAACAATGTTGTGCTCTATGCTGAAGGACTTCCATTGGCTTTGAAAGTAATGGGAGctaatttgtttggtaaaacaGTTGAGGAATGGAAATCTGCATTGgctaaatatgaaaaaattccTAATAAAGAGGTTCAAAATGTACTTAGAGTAACTTTTGATAATTTAGAAGAGAATGAGAAGGAAATTTTCTTGGATATAGCATGTTTCTTCAAGGGAGAGACAGTGGAATATGTCGAAAAAACACTTCAAGCATGTGGTTTCTTTCCGAAATTCGGTATCAGTGTACTTACTGATAGGTCTCTTGTAAGTATTGATGAATATAACAGATTGAGAATGCATGATTTGATACAAGACATGGGTAGGGAAGTTGTTAGAGAAGTTTCTCCGTTAGAGCCTGGAAAACGGAGTAGGATATGGAATCATGAAGATGTTATTGAAGTACTAACCGAAAGTTCGGGGACTTATAGTATCCAAGGCATGATGGTGGATCTACCTGATCAATATATGGTACACTTGAAAGATGATTCCTTCAAAAAGATGACAAATCTCAAAATTCTTATAGTTAGAAATGGACACTTTTATGGAAGCCCTCAACATCTTCCAAACAATTTAAGGTTGCTTGATTGGGTGGAATATCCTTCATCATCTTTACCATCAACATTTCATCCAAAGAAACTTGTTGTACTCAACTTGTCGCGCAGTCGTTTTACAATGCAAGAGCCATTCAAGCATTTGGATTCTTTGACTTCTATGGATTTGAGTCATTGTCAGTTCTTAACAAAGCTACCTGACATTTCTAGTGCTCCAAATTTAACAGAACTAAATCTTGACTATTGTACAAATCTAGAACAAGTTCATGACTCAGTTGGATTTCTTGACAAACTTATTGAGTTAAGGGCTTATGGATGCACTAAGCTTAAGGATTTTCCACATGCCATCAAATTGACATCATTGCAAACTCTAATTCTTAATTGGTGCTCAAGTCTTCAAAAATTCCCAACAATTTTGgagaaaatggaaaatctcACATCTATTTCAATTGAAGGAACTGCTATTGAAGAATTGCCTTCTTCCATTGGAAATCTTGTTGCTCTTCAAGAATTTAGCATGACATCTTGCTTGAGGCTCAAGGAACTCCCAGAAAACATTGACTTgttgcataatcttagaaaccTTGATATTGAAGGTTGTCCACAACTTAGAAGttttttgacaaagttgagagaatTAGGACAATCTACTCTAACCTTTGGTAATGTTGAATCATTGAATCTAGAAAACTGTGGTCTTATAGATGAAGATCTTCCCATAATTTTCAACTGTTTCCCAAATTTATCATCAATAGTCCTTTCAGGAAGTAATTTTGTAACTCTTCCAAGGTGCATTGAAGAATATTATTCATTGGAATTGCTTCACTTAGACAACTGCAAACAGCTCCAAGAAATTCCAAGCCTTCCTCCCAATTTACAATTCATCAATGCAAGAAACTGCATATCATTGACTGCAGAGTCATCAAACTTATTACTAAGCCAGgAAACTTTTGAGGCATATGAGTTACAAGTTATGGTTCCTGGAACAAGGGTTCCAGAATGGTTTGACCACATCACAAAAGGAGAATATATGACCTTTTGGGTCAGAAAAAAATTTCCAGCAATTATTTTATGCTTTGCTCTTGCAATAGAGAGTAAAATGAAGAAGAGTTTCAGCTGCGAAATCCGATTCTATATAAACAGTGATGAAGTTTATGAATTGGAAATACCAATGATGTTTTCAGAACTGGTGACAGATCATCTATGGCTTTCTGATTTGAGGACTCATTCATCTATCAGATTGAATGATCTTGAATCATATCTAGTTGATGATGATTGGAATCAGATTGAGATTTCATGTGAAAAAGTTAATGAACCATCAAATATGACTATAAGCTGGTGTGGAGTTCATGTATGTAGGCAAGAAGCTAACATGGAAGATATTCTATTTGAAGATCCTTATCTTGATTCAGATTTAAGCATAGAAACTGAGAATATTGATCCTGATAATATTGCTGAATGCCACAATGACATAGATCATAATCAAGAAAAGATTTTATTGCATACCAAAACATTGGACAGTGTTACTAAAGATTCAATGGATATAGTGTGTTTTGAAGGCACTAATGTTGTCAAAGGATCAAACACTGTAGCATCTGATCATCTAGCAAATGCTCAACAAAAATCCATAGTCACAAATCCGGATGATGAAGACATGGAAGCATTTTATGCTATTCTTGATGCTGAGACCTCAAGACTTTCACTTTCCAATGACAACAAAGTGATTTCTGAATCATCCAAAAGAGTAATTCCAAGTGAAGAAACCAAGAAAGCTTTGAAGACACTTCAAGATTTTCTCACCAAAGATTTTTCTGTTCTTTTAAGGCCTAATGAGTACAATACAATGGAATCTACCTTAGATTACCTCACACATTTACCTGCAGAAGATGGAATATCAGTTGAAATAAGATCATTGGTTAAAGAATTTTCAAGACAGTTCACTTGTTGGAGTTATGATTACACACATGAAGGAGAGAAAATAGAGTTTACAAAAGCTAAGTTGTTGAAAAGTGATGAACTTGAAGAGGGTCTTGAAGCTAATAAAACCCTTTTTAGAGAAGTTAAGTATTTGGAAAATGAGTTATGCAATGAGTTGGAATATTTAGAGGAAAGGAAGAAGGAATTAGAAGAACAAATAAATGCTGTTAAGGCTAATATATCTGCTTCACAAGTAGCTAAGAACATGGCTTCTCATACAAAGAGAGAAATCTTTGAGAATGCAAAGATTCTAAAAGTTCAAAGAGATGAGTTAAGGGAACAAGTACATTCTTTGAGAGATGAGCATGAATTGGCTAAGAAAATTCAGGCAAATATTAGAGATGAATGGTCAAAGCTAGGTGAAAAGTTTACCAACATTGCCAACAAAAATTAG 4071 0.3382 MLSGWSYDVFLSFRGEDTRRSFTGSLYHGLCQKGINVFIDDEELRRGEQISPSLLTAIEESRISIIVFSTNYASSSWCLDELVKILECWRTKGQLVFPVFYYVDPSFVRHQRGSFGTAMAKHEVTFKDDVERLKKWKKALFDAANFSGWSLENGYEFELIIRIIEEVSSKLNHTLLHIAEHPVGLETRISEVKSLLQTENLGEEVSFIGIHGLGGIGKTTIARALYNSIANQFDAASFLTDIRESSTQRQGLVQLQETLLYETLGIKNIMLGNVYKGIPIIKKRLCGKKVLLILDDVDKLEQLQALAGGRDWFGLGSKIIITTRDKQLLANHQVDKTYEVKKLNHEEAFELFTWNAFKRKATNEGYMEISNNVVLYAEGLPLALKVMGANLFGKTVEEWKSALAKYEKIPNKEVQNVLRVTFDNLEENEKEIFLDIACFFKGETVEYVEKTLQACGFFPKFGISVLTDRSLVSIDEYNRLRMHDLIQDMGREVVREVSPLEPGKRSRIWNHEDVIEVLTESSGTYSIQGMMVDLPDQYMVHLKDDSFKKMTNLKILIVRNGHFYGSPQHLPNNLRLLDWVEYPSSSLPSTFHPKKLVVLNLSRSRFTMQEPFKHLDSLTSMDLSHCQFLTKLPDISSAPNLTELNLDYCTNLEQVHDSVGFLDKLIELRAYGCTKLKDFPHAIKLTSLQTLILNWCSSLQKFPTILEKMENLTSISIEGTAIEELPSSIGNLVALQEFSMTSCLRLKELPENIDLLHNLRNLDIEGCPQLRSFLTKLRELGQSTLTFGNVESLNLENCGLIDEDLPIIFNCFPNLSSIVLSGSNFVTLPRCIEEYYSLELLHLDNCKQLQEIPSLPPNLQFINARNCISLTAESSNLLLSQETFEAYELQVMVPGTRVPEWFDHITKGEYMTFWVRKKFPAIILCFALAIESKMKKSFSCEIRFYINSDEVYELEIPMMFSELVTDHLWLSDLRTHSSIRLNDLESYLVDDDWNQIEISCEKVNEPSNMTISWCGVHVCRQEANMEDILFEDPYLDSDLSIETENIDPDNIAECHNDIDHNQEKILLHTKTLDSVTKDSMDIVCFEGTNVVKGSNTVASDHLANAQQKSIVTNPDDEDMEAFYAILDAETSRLSLSNDNKVISESSKRVIPSEETKKALKTLQDFLTKDFSVLLRPNEYNTMESTLDYLTHLPAEDGISVEIRSLVKEFSRQFTCWSYDYTHEGEKIEFTKAKLLKSDELEEGLEANKTLFREVKYLENELCNELEYLEERKKELEEQINAVKANISASQVAKNMASHTKREIFENAKILKVQRDELREQVHSLRDEHELAKKIQANIRDEWSKLGEKFTNIANKN 1356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00227 1356 Coils Coil 1258 1292 - -
Tsu03g00227 1356 Pfam TIR domain 7 175 IPR000157 GO:0007165
Tsu03g00227 1356 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 149 IPR035897 -
Tsu03g00227 1356 SUPERFAMILY L domain-like 530 880 - -
Tsu03g00227 1356 Gene3D - 342 426 IPR042197 -
Tsu03g00227 1356 Gene3D Ribonuclease Inhibitor 701 886 IPR032675 -
Tsu03g00227 1356 ProSiteProfiles TIR domain profile. 5 171 IPR000157 GO:0007165
Tsu03g00227 1356 SMART till_3 6 146 IPR000157 GO:0007165
Tsu03g00227 1356 Gene3D - 170 338 IPR027417 -
Tsu03g00227 1356 Gene3D - 3 169 IPR035897 -
Tsu03g00227 1356 PRINTS Disease resistance protein signature 613 629 - -
Tsu03g00227 1356 PRINTS Disease resistance protein signature 207 222 - -
Tsu03g00227 1356 PRINTS Disease resistance protein signature 284 298 - -
Tsu03g00227 1356 PRINTS Disease resistance protein signature 377 391 - -
Tsu03g00227 1356 Gene3D Ribonuclease Inhibitor 530 700 IPR032675 -
Tsu03g00227 1356 SUPERFAMILY "Winged helix" DNA-binding domain 413 518 IPR036390 -
Tsu03g00227 1356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 436 IPR027417 -
Tsu03g00227 1356 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1123 1331 - -
Tsu03g00227 1356 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1123 1331 IPR044974 GO:0006952
Tsu03g00227 1356 Coils Coil 1300 1334 - -
Tsu03g00227 1356 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 8 1073 - -
Tsu03g00227 1356 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 1073 IPR044974 GO:0006952
Tsu03g00227 1356 Pfam NB-ARC domain 188 412 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00227 Tsu-Chr3 1834205 1840538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00227 7 780 WRKY Transcription Factor Family AT4G12020 31.677 3.53e-98 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00227 - - ccaj:109810288 2037.31