Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00222 ATGGGCGCTGAAAAAATTAGATCTTGTGCAAACATTCTTGAGAACTCTAAGCCATACTTTGCCATGATCATATTACAGTTTGGTTATGCAGGTATGAACATTATAACCAAGCTTTCTCTCAATGGAGGTATGAGTCACTATGTCCTTGTTGTATATCGCCATGTTTTTGCAACTATTGCTATAGCTCCCTTTGCCATAATCTTTGAAAGgaAGGCTCAACCAAAGATTACATTTCCAATTTTCATGCAAATTTTCCTCCTAGCTTTGCTTGGGCCAGTGATAGATCAAAACTTCTACTATGCTGGGTTGAAATTAACTTCCCCAACCTTCTCATGTGCAATGAGCAATATGCTTCCAGCCATGACATTTCTCATTGCAGTTTTATGCCgGATGGAAAAAATCAACATGAAGAAGTTGAGATGCCAAGCAAAGATAATTGGAACAATGTTAACTGTGGCTGGAGCAATGTTGATGACCTTATACAAAGGTCCTATTGTGGAATTGTTTTGGACTAAAGATACACTTCATAGTAAAAACAATGCAACAAATATCACAACATCCTCAAGCAATGATAATTGGTTCATAGGCTCCATTTTACTAATTATTTCAACTTTGGCATGGGCATCCCTCTTTGTTTTACAAGCTAAAGCTATAGAAACATACAAGAATCATCAGTTAACACTCACATCACTTGTATGTTTCTTTGGCACGCTTCTAGCTTTTGCTACCACTTTGGTTATGGAACACAAAGATTCTGTTTGGACAATTGGTTGGGATATGAATTTATTAGCTTCTGCCTATGCGGGGATTGTTACATCAAGTACAGCATACTACGTACAAGGGTTGGTAATGAAAAAGAAAGGGCCTGTTTTCACTACTTCATTTAGCCCtttgatgatgattattgtAGCATTCATGGGTTCCTTTATCCTTGCAGAGCAGATTTTTCTTGGAAGTGTGATTGGTTCCATCTTGGTTATCATTGGTTTATATTCTGTTTTGTGGGGTAAGCACAAAGAACAAGTGGTGGAAAATAAAGTGGTACCAGATGATAAACCCTTGCCTATAAAGGGTGCTAAGAGATTTAAAGGAGTTGAAGAAGGCTTGGAACCAAAGGTTTCCACTAGCCTCCAATAA 1137 0.3729 MGAEKIRSCANILENSKPYFAMIILQFGYAGMNIITKLSLNGGMSHYVLVVYRHVFATIAIAPFAIIFERKAQPKITFPIFMQIFLLALLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMTFLIAVLCRMEKINMKKLRCQAKIIGTMLTVAGAMLMTLYKGPIVELFWTKDTLHSKNNATNITTSSSNDNWFIGSILLIISTLAWASLFVLQAKAIETYKNHQLTLTSLVCFFGTLLAFATTLVMEHKDSVWTIGWDMNLLASAYAGIVTSSTAYYVQGLVMKKKGPVFTTSFSPLMMIIVAFMGSFILAEQIFLGSVIGSILVIIGLYSVLWGKHKEQVVENKVVPDDKPLPIKGAKRFKGVEEGLEPKVSTSLQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00222 378 Pfam EamA-like transporter family 18 159 IPR000620 GO:0016020|GO:0016021
Tsu03g00222 378 Pfam EamA-like transporter family 195 334 IPR000620 GO:0016020|GO:0016021
Tsu03g00222 378 PANTHER WAT1-RELATED PROTEIN 12 361 - -
Tsu03g00222 378 PANTHER WAT1-RELATED PROTEIN 12 361 IPR030184 GO:0016021|GO:0022857
Tsu03g00222 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 339 - -
Tsu03g00222 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00222 Tsu-Chr3 1765383 1769419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00222 1 343 Nodulin-like Gene Family AT5G07050 70.690 7.85e-179 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00222 - - gmx:100799947 567.77