Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00210 ATGAAAAGACTTGAGATTGCTTCTGCTATTAAAGCCATCAAGTCATCCCTTGTTGAAATcaatcaaagaagaaaaaggtatGACTTTAAAGCTGAAAATGGATCAGGAAGCTCTAGAGGGGCTActcaaaatgaaaattttggtgACCCTCGAATGGCTTCTCATTTCATTAAAGAGACTCAAATTGTCGGGTTAGAGAAACCAGCAGAAGATTTGATGCGTTGTTTGGTGGAGGGAACCAATGAGCTCAAGTTGGTTTTTGTGGTTGGCATGGGAGGACTCGGAAAAGCAACTCTTTCTAACCATGTTTTTCGTAACAAGCGTGTGGAAAAACACTTCAATTATAGACTCTTTATCACAGTTTCTCAATCTTATACTGTGAGGGAGTTGTTGATTAATATGGTAAAGGAATTCTATAAGGACAACATGGAGCTTATTCCAAAGGATCTGCAGGAGATGGATTGCAAAACGTTGATCGATCAAGTGATACAATTCCTTGAATCAAAGAGGTACTTAGtgctttttgatgatgtttggaCTGAAAATTTTTCTGATGAGATTGAACATGccttaattaataataacaaaggaAGTAGAATCATTGTAACCACTAGAATGATGCATGTAGCTGAATATTTTAAGAAATCTTTTACTGTTCATATTCACGAGCTACAACCTTTGCCTGAAGACAAAGCATGTGAACTGTTTCACAAGAAGACATTTAGATCTAACCCTGAAAATCAGTGTCCACAAGAACTTGTGAAAATGTCcaatgaaattgttaaaaaatgtgaagggCTACCATTAGCAATTGTGGCCATTGGTGGTCTTttatcaacaaaagaaaaaagcatAGTTGAGTGGGAAAAGGTGACAAAAAATTTGAGAATCGAGTTACAATGCAATGCACATTTAATTAATCTAACAAGAATTTTATCTCTTAGTTATGATGATTTACCTTCCCAATTGAAATCATGCATGCTGTATTTTGGCATATATCCTGAGGACTACACCATCAACCGGAAGAGACTTACCCGACAATGGATGGCTGAAGGGCTTGTTAGATACACAGAGAGAGAAACTTTGGAGGATGTTGCGGAAGAGTACCTGACAGAGTTGATACAAAGAAGTTTGGTTAATGTTTCCAAAGTTGGCTTTGTGGGAAAGTCAAAAGTTGTCAAGTCCATGATTTGTTGCATGAAGtga 1206 0.3375 MKRLEIASAIKAIKSSLVEINQRRKRYDFKAENGSGSSRGATQNENFGDPRMASHFIKETQIVGLEKPAEDLMRCLVEGTNELKLVFVVGMGGLGKATLSNHVFRNKRVEKHFNYRLFITVSQSYTVRELLINMVKEFYKDNMELIPKDLQEMDCKTLIDQVIQFLESKRYLVLFDDVWTENFSDEIEHALINNNKGSRIIVTTRMMHVAEYFKKSFTVHIHELQPLPEDKACELFHKKTFRSNPENQCPQELVKMSNEIVKKCEGLPLAIVAIGGLLSTKEKSIVEWEKVTKNLRIELQCNAHLINLTRILSLSYDDLPSQLKSCMLYFGIYPEDYTINRKRLTRQWMAEGLVRYTERETLEDVAEEYLTELIQRSLVNVSKVGFVGKSKVVKSMICCMK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00210 401 Pfam NB-ARC domain 66 318 IPR002182 GO:0043531
Tsu03g00210 401 PRINTS Disease resistance protein signature 85 100 - -
Tsu03g00210 401 PRINTS Disease resistance protein signature 165 179 - -
Tsu03g00210 401 PRINTS Disease resistance protein signature 264 278 - -
Tsu03g00210 401 MobiDBLite consensus disorder prediction 29 48 - -
Tsu03g00210 401 PANTHER - 8 393 - -
Tsu03g00210 401 Gene3D - 227 315 IPR042197 -
Tsu03g00210 401 PANTHER DISEASE RESISTANCE PROTEIN RP 8 393 IPR044974 GO:0006952
Tsu03g00210 401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 330 IPR027417 -
Tsu03g00210 401 Gene3D - 316 398 IPR036388 -
Tsu03g00210 401 Gene3D - 46 220 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00210 Tsu-Chr3 1713631 1714836 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00210 62 296 WRKY Transcription Factor Family AT4G12020 24.895 4.11e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00210 K13457 - vun:114181831 462.996