Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00196 ATGAAGAAGAAGCTCGATACCCGTTTTCCTGCTGCTCGGATTAAGAAGATTATGCAAGCAGATGAGGATGTTGGAAAGATAGCATTGGCAGTTCCTGTTTTAGTTTCAAAAGCTCTGGAGTTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTACAGAGAGGAGCAAAGACCATGAATGCATTGCATTTGAAACATTGTGTACAAAGCTACAATGTCTTTGACTTTTTGAGAGACATCGTCAACAGAGTTCCTGACTATAGCCACGGCCATGCCCACGCTCATTCTGAGCCTGGAGCTGATGATCGCGCCCTTCCAAAGAGAAGGAAAGCTGCCGGTGATGATGGCAATGACAGTGATGACGAGGCTAAGCGGAGTAAGATGCATGAGTCAGGCCACACTGGCGGTACTGGTAGGGGAAGAGGAAGAGGCAGAGGAAGAGGCCGTGGTCGAGGGGCTCGAGCCGCAGAAAGAGAAGCCTTACATCAGCAGGTTGAACCCGAACCTTGCACCTCGATGCAACAAAGTAGCAAAGAAGTCTCTCATACAAGTATGGCAATAGATAATGGTCCAGAATCAAAGGAGTTATCAAAGGAAAATAATACAGTTCATGAAGAAAGCACTCAATCTCTCCGAAACATTGATCTGAATGCCAGTATACATGAAAATGAGGACAAAAACAATACAAGCATGGCTACTACTCAGGCCTCGGTGCCTGAAACTGCTACAACAGATATGCAACATGAAGAAATTCCCGGTTGGTCCCTTCCTGATGTGGACAAGATGGCGATCGACACATTGCAGCTTGCAGCAAACCTTGGTAATAGGATAGAAGAGGAGGAAGATTATGATGAGGAAGGGTAA 873 0.4548 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVNRVPDYSHGHAHAHSEPGADDRALPKRRKAAGDDGNDSDDEAKRSKMHESGHTGGTGRGRGRGRGRGRGRGARAAEREALHQQVEPEPCTSMQQSSKEVSHTSMAIDNGPESKELSKENNTVHEESTQSLRNIDLNASIHENEDKNNTSMATTQASVPETATTDMQHEEIPGWSLPDVDKMAIDTLQLAANLGNRIEEEEDYDEEG 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00196 290 SUPERFAMILY Histone-fold 3 96 IPR009072 GO:0046982
Tsu03g00196 290 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Tsu03g00196 290 MobiDBLite consensus disorder prediction 153 167 - -
Tsu03g00196 290 MobiDBLite consensus disorder prediction 92 139 - -
Tsu03g00196 290 MobiDBLite consensus disorder prediction 206 247 - -
Tsu03g00196 290 PANTHER HISTONE SUPERFAMILY PROTEIN 1 289 - -
Tsu03g00196 290 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Tsu03g00196 290 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 289 - -
Tsu03g00196 290 MobiDBLite consensus disorder prediction 170 193 - -
Tsu03g00196 290 MobiDBLite consensus disorder prediction 92 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00196 Tsu-Chr3 1569080 1572964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00196 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.211 1.69e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tsu03g00196 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00196 K21752 - gmx:100810093 398.282