Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00195 ATGGCTTCCGAATCCTCTAGCATCTCTGCCACTTCGCAAAATCGAGTTGATTCTTCCAACTCAAAAAAAGTGGCGGTCACGAAGGAGATCGAACAAGATCAATCATCAAACTCAAATTCCAAAAACCCCGTTGATTTCGTGAAGCTAATGAAAGACGATTCGGTGCCTATGTCCAATGTGCAAGAGCACAATTTTTTTAGCCCTATTCAAGTTGGTTCGTCATCTCGTTTTTCTATTAATAACAATGAAACAAAAGATGCGAACGAGGATGAAGAGAAAAATTCGGATTCAAGGTCTTTTTCTTGCTCTTTTTGCAAGAGACAATTTTCAACTTCACAAGCGTTAGGAGGACACCAAAACGCTCATAAGGCCGAACGTGCCTTAGAAAAGCAGCGTAAACAAAGGTACGATGGTGGTGCTTTAGGTTTAGGGCAACCTCTTTTTAGCCCTTATTATAGTTATTCAAACACTCTTTTTACACCCCCTTATTATAGGTCACTTGGGACTAGAATAGAGTCCACAATTCAAAAACCACCTTATATTAGTCCTAGGTTTACCCCACTTAGTATTGGGTATAGTCATGGTGCTTTGTGTTTGCAAGAGATATTAAACCCCTCTCTTATGTCATTGAGAAATATGGGGGGTGGTAATAGCGGGATTGGAAATTTAAGCATTGGTGGTGCAACTACTTTAAAGATTGAAGAtggttcaaaaaataaattaaagattgaAGAtggttcaaaaaataaaattagtgataTTCTAAAATTTGGAGAGTCTTCTACAAATATTGCTACAAGTTCAAACTCAAACatagagaagaaaaatattatggCTCTTACTTCTATTAAGGATGATATTCATCAATCAAAGTCCAACATTGAAGAAGATACCTCCAATTCTGATGAATCATCTGGACTTGATTTGTCACTTAAGCTTTAA 942 0.3524 MASESSSISATSQNRVDSSNSKKVAVTKEIEQDQSSNSNSKNPVDFVKLMKDDSVPMSNVQEHNFFSPIQVGSSSRFSINNNETKDANEDEEKNSDSRSFSCSFCKRQFSTSQALGGHQNAHKAERALEKQRKQRYDGGALGLGQPLFSPYYSYSNTLFTPPYYRSLGTRIESTIQKPPYISPRFTPLSIGYSHGALCLQEILNPSLMSLRNMGGGNSGIGNLSIGGATTLKIEDGSKNKLKIEDGSKNKISDILKFGESSTNIATSSNSNIEKKNIMALTSIKDDIHQSKSNIEEDTSNSDESSGLDLSLKL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00195 313 PANTHER ZINC FINGER PROTEIN JAGGED 73 313 IPR045320 GO:0003700
Tsu03g00195 313 SUPERFAMILY beta-beta-alpha zinc fingers 97 128 IPR036236 -
Tsu03g00195 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Tsu03g00195 313 MobiDBLite consensus disorder prediction 290 313 - -
Tsu03g00195 313 MobiDBLite consensus disorder prediction 1 21 - -
Tsu03g00195 313 PANTHER ZINC FINGER PROTEIN KNUCKLES 73 313 - -
Tsu03g00195 313 MobiDBLite consensus disorder prediction 76 96 - -
Tsu03g00195 313 MobiDBLite consensus disorder prediction 30 44 - -
Tsu03g00195 313 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Tsu03g00195 313 MobiDBLite consensus disorder prediction 1 45 - -
Tsu03g00195 313 Gene3D Classic Zinc Finger 78 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00195 Tsu-Chr3 1563237 1564178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00195 76 134 C2H2 Transcription Factor Family AT5G01860 52.542 3.07e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00195 - - mtr:MTR_3g011970 370.548