LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g00194	ATGAAGCCTTACATTTTCTTGTTACCTATGTCTTGGTATGTATACATTCATCTCTTTGCCTTAACCTTAATGTGGTTTGGTCCAAACAGAATTCTGGCATTTGCAGGAAACCAAACAGATCATTTGGCTCTACTCCAATTCAAGCAATTGATATCTAGTGACCCTTATGGTATCCTAGGTTCTTGGAATAGTTCAACTCACTTTTGCAAATGGAATGGAGTCACATGTAATCTCATGCATCAAAGAGTTATAAGGTTGAACTTGCAAGAATACAACTTGCATGGATCCATTTCTCCATATATTGGCAATCTCTCTCATATGAGATACCTCAATCTTGCAAGTAACCTCTTCTACGGAAATATTCCGCAAGAATTGGGTTGTTTGTCAAGATTAAGGTTTCTTTTTCTAGCTAATAACTCGTTGGCCGGAGAATTTCCTATAAACTTAACAAAGTGTGTTGAGCTCAAAGGCATAGACTTAGCAGGAAACAATCTTATTGGAAAAATACCAAGCCAAATTGGTTCTTTACAAATGCTTCAAAATTTCTTCATGGAAAGAAACAATTTATCAGGAAAAATCCCACCATCGATAAGGAACCTTGCATCCCTTACTATTTTTTCGATAAGTTACAATAACTTGGAGGGAAATATTCCAAAAGAAATTTGCTTCCTAAAACAGTTGAAGGTTATAGCAGTGCATGTCAACAAATTGTCTGGTACATTTCTTTCTTGTCTTTATAATATGTCATCTCTTAATGTGATCTCAGTTGCAGTTAATGCATTTAACGGCTCTCTTCCGTCAAATATGTTCCAAACTCTCCCCAATCTCCAATATTTTACAATTGGAGGAAATCAATTCTCAGGTCCAATCCCCACTTCCATTGCAAATGCCACTAGTTTGAATATATTTGAAATCAGTGGAAACAGTTTTGTAGGACAAGTTCCGAGTCTAGGGAAGCTACAAAGTCTTTGGCAGCTAAATATGGCTGAAAATAATTTAGGTGAGAATTCAACTAAGGATCTGGAGTTTTTAAAATCATTGACAAACTGTAGTGAGTTGCAACAGATCTCATTATCCTATAATAATTTTGGAGGTAGTTTGCCAAATTCTATAGGGAATTTATCCACCACACTTAGTCAACTACATTTAGGGGGAAATCAAATATATGGCAAAATTCCTATAGAATTAGGAAATCTAATTGGCTTGAGTCTCTTGAACATGGTAGATAACAACTTAGAAGGAACAATTCCAACTACTTTTGAGAAGTTTCAAAAGATACAAAAGTTAATATTGGCTGGAAACAGATTATCAGGAAATATACCAGTTTTCATATGTAACCTTAGTCAATTGTATGCTTTAGGACTGCGTGATAATATGTTAGAAGGGAATGTTCCTCCAAATATTGGAAATTGTCAAAATTTACAATACTTAAGTTTTTCACAAAACAACCTTAGAGGAGTCATACCCTTAGAGATTTTTAGTATTTTGTCTTTAACAAATTTGCTAGACTTGTCAGAGAACTTATTGAGTGGTGGTTTACCAAAAGAAGTAGGTATgctaaaaaatattgattggTTAGATGTTTCTGAAAATCATTTGTCCGGGGACATTCCAGAAAGCATTGGTGAATGCATAAGTTTGGAGTATCTTAATTTGCAAGGAAACTCCTTTGGAGGAATCATACCATCCTCTTTGGCATCGCTCAAAGGTCTTAAAAGATTAGATTTGTCTCGAAATCACTTGTCTGGACCAATTCCAAAAGTTTTGCAGAATATTTCTTTCCTAGAGTACTTCAATGTTTCTTTCAACATGTTGGAAGGCGAggtaccaattgaaggtgtctTTCGAAATGCAAGCGATTTAATAGTGACCGGTAACAATAATCTTTGTGGAGGTATTTCAAAGCTACATTTACCGCTATGCCCTGTCAAACGTACGAAACGTGCAAAAATCCATAATTACATGTTGATTGTTGTGATAGTTTGTGTGGTTGTTTTTTCTCTCTTGCTGGCATTTATTCTAAGTGTCTACTggataagaaaaagaaacaagaaacagTCTTCAGATTCACCAGCAATTGACCAACTAGCTAACGTTTCATACAAAGACCTTCATAAGGGAACTGATGGGTTCTCAGCTAGAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTGTATAAAGGATGTCTTGCGTCAGACGACAAAGCTGTTGCCATAAAGGTCTTGAACCTACAAAAGAAGGATGCTCAAAAGAGTTTCATTGTTGAATGTAATGCACTAAAATGTATTAGACATCGAAATCTGGTTAAGATTCTAACATGTTGTTCTAGTATTGATTACAAAGGTCAAGAATTTAAAGCTCTAGTGTTTGATTACATGACAAATGGAAGCTTGGAAGAATGGTTGCATCCAAAGCCGGGGAATgtagagcttatgaaaatactaGACCTTCATCAaatgttaaatataattatcGATGTTGCTTCTGCATTACATTATCTTCATCATGAATGTGAGCAATTGGTCATTCATTGCGATCTAAAGCCAAGCAATATCCTTCTTGATGACGACATGGTTGCACATGTAAGTGATTTTGTGATAGCAAAACTTGTCTCGTCCATTGATGTTGCCGAAACTAGTACAATTGGAATAAAAGGGACTATTGGATATACTCCTCCAGAGTATGGAATGGGGTCTAAAGTTTCCACATGTGGTGACATGTATAGCTTTGGGATACTTATATTGGAAATGCTTACCGGAAGAAGACCGACAGATGAAATGTTTCAAGATGGTCAAAATATGCATAACTTTGTTGCAGCTTCATTTCCTGATAATTTAATGCAGATTTTGGACACACATCTTGCTGCAAGAGATGAAGAAGCAATAACAGAAGATGGAAACAATCATCGACGTATGCTAACTGGAGAGAAGTTAGGAGTTTCACTTATTAGGATTGGACTTGCTTGTTCAATGAAATCaccaaaagaaagaatgaatatAGTAGATGTTACAAGAGAGCTAAACATAATCAGAAAGgaTAATAGCACTTAA	3051	0.3445	MKPYIFLLPMSWYVYIHLFALTLMWFGPNRILAFAGNQTDHLALLQFKQLISSDPYGILGSWNSSTHFCKWNGVTCNLMHQRVIRLNLQEYNLHGSISPYIGNLSHMRYLNLASNLFYGNIPQELGCLSRLRFLFLANNSLAGEFPINLTKCVELKGIDLAGNNLIGKIPSQIGSLQMLQNFFMERNNLSGKIPPSIRNLASLTIFSISYNNLEGNIPKEICFLKQLKVIAVHVNKLSGTFLSCLYNMSSLNVISVAVNAFNGSLPSNMFQTLPNLQYFTIGGNQFSGPIPTSIANATSLNIFEISGNSFVGQVPSLGKLQSLWQLNMAENNLGENSTKDLEFLKSLTNCSELQQISLSYNNFGGSLPNSIGNLSTTLSQLHLGGNQIYGKIPIELGNLIGLSLLNMVDNNLEGTIPTTFEKFQKIQKLILAGNRLSGNIPVFICNLSQLYALGLRDNMLEGNVPPNIGNCQNLQYLSFSQNNLRGVIPLEIFSILSLTNLLDLSENLLSGGLPKEVGMLKNIDWLDVSENHLSGDIPESIGECISLEYLNLQGNSFGGIIPSSLASLKGLKRLDLSRNHLSGPIPKVLQNISFLEYFNVSFNMLEGEVPIEGVFRNASDLIVTGNNNLCGGISKLHLPLCPVKRTKRAKIHNYMLIVVIVCVVVFSLLLAFILSVYWIRKRNKKQSSDSPAIDQLANVSYKDLHKGTDGFSARNLIGSGSFGSVYKGCLASDDKAVAIKVLNLQKKDAQKSFIVECNALKCIRHRNLVKILTCCSSIDYKGQEFKALVFDYMTNGSLEEWLHPKPGNVELMKILDLHQMLNIIIDVASALHYLHHECEQLVIHCDLKPSNILLDDDMVAHVSDFVIAKLVSSIDVAETSTIGIKGTIGYTPPEYGMGSKVSTCGDMYSFGILILEMLTGRRPTDEMFQDGQNMHNFVAASFPDNLMQILDTHLAARDEEAITEDGNNHRRMLTGEKLGVSLIRIGLACSMKSPKERMNIVDVTRELNIIRKDNST	1016

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g00194	1016	Gene3D	Phosphorylase Kinase; domain 1	692	792	-	-
	Tsu03g00194	1016	Pfam	Protein kinase domain	714	938	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00194	1016	Gene3D	Ribonuclease Inhibitor	39	155	IPR032675	-
	Tsu03g00194	1016	PANTHER	LRR RECEPTOR-LIKE KINASE	25	1011	-	-
	Tsu03g00194	1016	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	842	854	IPR008271	GO:0004672\|GO:0006468
	Tsu03g00194	1016	Gene3D	Ribonuclease Inhibitor	156	269	IPR032675	-
	Tsu03g00194	1016	Gene3D	Ribonuclease Inhibitor	270	345	IPR032675	-
	Tsu03g00194	1016	Gene3D	Transferase(Phosphotransferase) domain 1	793	1016	-	-
	Tsu03g00194	1016	PANTHER	OS04G0122200 PROTEIN	25	1011	-	-
	Tsu03g00194	1016	SUPERFAMILY	Protein kinase-like (PK-like)	685	1007	IPR011009	-
	Tsu03g00194	1016	ProSitePatterns	Protein kinases ATP-binding region signature.	717	740	IPR017441	GO:0005524
	Tsu03g00194	1016	SUPERFAMILY	L domain-like	377	631	-	-
	Tsu03g00194	1016	Pfam	Leucine rich repeat	546	605	IPR001611	GO:0005515
	Tsu03g00194	1016	ProSiteProfiles	Protein kinase domain profile.	711	1009	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00194	1016	SMART	serkin_6	711	1010	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00194	1016	Gene3D	Ribonuclease Inhibitor	346	641	IPR032675	-
	Tsu03g00194	1016	SUPERFAMILY	L domain-like	38	333	-	-
	Tsu03g00194	1016	Pfam	Leucine rich repeat N-terminal domain	38	77	IPR013210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g00194	Tsu-Chr3	1556187	1559933	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g00194	37	1012	Receptor kinase-like Gene Family	AT3G47570	44.422	0.0	801

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Tsu03g00194		Pkinase	1.8e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g00194	-		-	mtr:MTR_5g025930	1421.37