Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00189 ATGCATCATCTATGGTTATTTACCATCAAATTGATATACCTATTCTATTTTGCTGCATCTCAGAACAATAGCAATACACAAGAACTACTTAATTATAGATATGCTTGTTTGGACCAATCTTCTATTGCTCCTTCCACCACATACCAAACCAACCTCAACAGTTTAATGTCTACATTATCATCAGATTCTGCTACAAGCAATGGTTTTGGAAATAGAACTTCAGGTAGTGATCAAAACAATAAGGTTTATGGACTTTACCTTTGTCGTGGCGATGTTAATACAAGTCTTTGTCATTCATGTGTTCAAAACTCTAGCAGATTGCTCAAACAACACTGTCCTAATAATGCTTCAGCGGTTTTGTGGTACCCCTTTTGTCTTGTGAGGTACTCAAACAATAATTTCTTTGGTAAGCTTACTATAAGACCAAGGGTTCCTATGTTTGATGCAAACCAGAATTTGACTAGTGCTGGTGAATTTGATAGTGATGCTAGAATTTTGATGAATGGTTTAATACAAGTGGGATCACAGACAAAATTAATGTTTGGAACACATATGTTTAACATAAATGGTACTCAAACTAGGTATGGTTGGGTGCAATGCAGCAGAGATATTACTAGTGACGAATGCAGAACTTGTTTGAGTAActtgcttgatgatgttgaaaattgTTGTATGGAGAAGAAAGTGTGGAGAATCTTTTCTCCAAGTTGTATTATGATGTATGAAACTCAACCATTCTTTGTGAATGGTACAATTTCTGAGCAAGCCAAAGAAAAGGATGACTCAAAGTCATGGATTATCATAGTCATTGCTGTAATTGGAATAGCAGTCGCAGCCCTATTGGCTTTCAGCGCATACTATTTCTGGTGCTTGAAACGTAAAAAAGAGAGAAATTCTGTGCAAGTCCTTAGTCCAATGTTTTCTCAAGATCAGACGGACATTGAGGAGACTGGAAACACTGACCTACCTATGATGCCTCTGAGTACTATTCTAAAGAGTACTAATAATTTTTCTGATGAATATAAATTGGGGAAAGGTGGATTTGGAACTGTGTACAAGGGTGTTTTAGCGGATGGAAGGGAAATTGCTGTGAAAAGGCTTTCAAAAACTTCAGTTCAAGGTGTGGAggaattaaaaaatgaaataatactGATTGCCAAATTGCAACATCGAAACCTTGTGAGACTATTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTATCTATGAATATTTGCCTAATTCAAGCCTTGATTTCCACCTGTTTGATATGGTTAAGGGTGCAAAACTAGATTGGAAACAGcgattaaatattattaatggGATTGCTAAAGGAATTCTATATCTTCATGAGGACTCTAGGCTCAGAGTTATTCACAGAGATTTGAAAGCTAGCAATATACTGTTAAATCATGAAATGAATCCAAAAATATCAGACTTTGGACTGGCAAGAGCATTTGGAGGAGACCAGGATGAAGCAAATACAATTAGAGTTGTGGGAACTTATGGATACATGGCTCCAGAATATGCTATGGAAGGGTTATTTTCGGTGAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGCTAGAGATCAtaagtggaagaaaaaacaGCAAATTCTATCTTTCGGAGCCTGGACAAACCCTTCCCATATATGCGTGGAACCTTTGGTGCAAAAGAAAAGGTTTGGACTTGATGGATCCATTGATAGAAAATTCATGTGTACCTAGTGAATATCTCAAGTGTTTACATATTGGACTATTGTGTGTACAAGCAGATGCAGCAGATAGACCTACAATGTCAAGTGTTGTTCACATGCTTGCAAGTGACACAATGACTCTTACCAGCCCTACACGCCCTGCATTTTCTGTTGGAAGAGATGACGTCAGACGAGCTGTTGTTGGCCAAGAGCCTTCATCAAACACTTCTATCTCGGCCAATGAAGTAACCTTGTCTGAATTGAGGCCTAGATGA 1977 0.3657 MHHLWLFTIKLIYLFYFAASQNNSNTQELLNYRYACLDQSSIAPSTTYQTNLNSLMSTLSSDSATSNGFGNRTSGSDQNNKVYGLYLCRGDVNTSLCHSCVQNSSRLLKQHCPNNASAVLWYPFCLVRYSNNNFFGKLTIRPRVPMFDANQNLTSAGEFDSDARILMNGLIQVGSQTKLMFGTHMFNINGTQTRYGWVQCSRDITSDECRTCLSNLLDDVENCCMEKKVWRIFSPSCIMMYETQPFFVNGTISEQAKEKDDSKSWIIIVIAVIGIAVAALLAFSAYYFWCLKRKKERNSVQVLSPMFSQDQTDIEETGNTDLPMMPLSTILKSTNNFSDEYKLGKGGFGTVYKGVLADGREIAVKRLSKTSVQGVEELKNEIILIAKLQHRNLVRLLACCIEQNEKLLIYEYLPNSSLDFHLFDMVKGAKLDWKQRLNIINGIAKGILYLHEDSRLRVIHRDLKASNILLNHEMNPKISDFGLARAFGGDQDEANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGRKNSKFYLSEPGQTLPIYAWNLWCKRKGLDLMDPLIENSCVPSEYLKCLHIGLLCVQADAADRPTMSSVVHMLASDTMTLTSPTRPAFSVGRDDVRRAVVGQEPSSNTSISANEVTLSELRPR 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00189 658 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Tsu03g00189 658 Gene3D Phosphorylase Kinase; domain 1 298 412 - -
Tsu03g00189 658 SMART serkin_6 337 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00189 658 ProSiteProfiles Protein kinase domain profile. 337 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00189 658 Gene3D Transferase(Phosphotransferase) domain 1 413 619 - -
Tsu03g00189 658 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
Tsu03g00189 658 Pfam Protein tyrosine and serine/threonine kinase 341 608 IPR001245 GO:0004672|GO:0006468
Tsu03g00189 658 SUPERFAMILY Protein kinase-like (PK-like) 320 608 IPR011009 -
Tsu03g00189 658 CDD STKc_IRAK 343 608 - -
Tsu03g00189 658 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 34 655 - -
Tsu03g00189 658 Gene3D - 30 134 IPR038408 -
Tsu03g00189 658 Gene3D - 145 246 IPR038408 -
Tsu03g00189 658 Pfam Salt stress response/antifungal 41 131 IPR002902 -
Tsu03g00189 658 Pfam Salt stress response/antifungal 151 243 IPR002902 -
Tsu03g00189 658 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 34 655 - -
Tsu03g00189 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Tsu03g00189 658 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00189 Tsu-Chr3 1532016 1536058 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00189 34 655 Receptor kinase-like Gene Family AT4G05200 41.240 1.72e-168 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g00189 PK_Tyr_Ser-Thr 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00189 - - gmx:100798691 1021.15