Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00185 ATGGGTTTTGAACCATTGATTTGGTACTGCAAGCCAGAACCAAACAGTATTTGGGAAAACATAGTAGATAGTGCTTTTGGATCTTATACACCTTGTGCAATCAACACTCTTGTTATCTCAACCTCAAATTTGGTTCTTATGTGTCTTTGCTTATATAGAATATGGCTTATTGCTTTCAATGCCAAAGCTCAAAGGTTTTGTTTGAAATCAAATTACTATAATTATATTCTTGGAATGTTGGCTAGTTATTGTGCTTTTCAGCCTTTGTTGAGATTATTCACAGGAAATTCAGCCTTCAACCTGAATGAGGAAACTGATTTTGCTCCTTTTGAGATAACATCTTTGATCATTGAATCACTTACTTGGTTCTCAATGATAATTCTCATCCTCTTGGAAACCAAGATTTATGTTAGGCAATTTAGGTGGTTGGTGAGGTTTGGGGTTATTTATGTTTTGGTGGGAGATATTGTAATGCTTGACCTTATTCTGTCAGTGAAAGATTACTCTAGCAGATCTTCCTTATATCTGTATATCAGCACTATTATCTGCCAGGTGTTGTTTGGTACCTTACTTCTAGTTTACATTCCTAATTTAGTTCCATATTCTGGTCATACAACAATGCAAGCTGAGATACCTGACAATGGAGAATATGAACCACTTTGTGGAGACGATCAAGTTTGCCCCGAGATGCGTGCCAGTTTTTTATCTAGATTAAGTTTTGGATGGATAACACCACTTATGAAACAAGGCTACAGAAAACCAGTCACCGAAAAGGATGTTTGGAAGCTAGACAAATGGGATCAAACTGAGACATTAAATGAAAAGTTCCAAAAGTGTTGGAATACAGAATTTGAAAGCTCTAACCCTTGGCTTTTAAGAGCATTAAACAGTAGTCTAGGGAAAAGGTTTTGGTTTGGAGGCATCTTTAAGATTGGTAATGATCTTTCTCAATTTGTGGGGCCAATTTTGCTGAACCATCTGTTAAGTTCAATGCAAAATGGAGATCCGTCTTGGATCGGTTACATCTACGCCTTCTCCATATTTGTTGGAGTGTCAGTTGGTGTTCTATGTGAGGCACAGTATTTCCAGAATGTTATGCGTGTTGGTTTTCGTCTCAGATCAACATTGGTGGCTGCTATATTCCGAAAATCTTTGAGGCTAACTCATGAAAGTAGAAAGAAATTCTCAATGGGGAAGCTTATGAATATGATAACAACTGATGCCAATGCATTACAGCAAATATGTCAACAACTTCATGGACTATGGTCAGCACCATTTCGAATCACCATAGCTATGGTTCTTCTATACCAGCAACTAGGTGTTGCTTCACTTCTTGGAGCACTAATGCTAGTTCTCATTATTCCACTACAGACATTTGTGATTAGCAAAATGAGAAAACTGACAAAGGAAGGACTGCAACAGACAGACAAAAGGGTTGGTCTGATGAACGAAATTCTTTCTGCAATGGATACAGTAAAATGTTATGCATGGGAAACAAGCTTTCAGTCTAGAGTTCAAAGCATTCGACATGAAGAACTATCATGGTTCCGCAAAGCGCAGCTTCTATATGCTCTAAACAGTTTTATACTGAACAGCATACCAGTTCTTGTGACAGTAACTTCCTTTGGAATGTTTACTTTACTTGGTGGAGAATTGACACCTGCAAGAGCATTCACCTCACTATCGCTGTTTTCAGTTTTGCGCTATCCTTTAAATATGCTTCCAAATTTACTAAGTCAGGTAGCAAATGCAAATGTCTCCTTACAACGTTTAGAGGAACTGTTTTCAGCTGAGGAACGAAATTTACAACAAAATCCACCAATTGTTCCAGGACTTCCAGccatatcaataaaaaatggaGATTTTTCATGGGATCCTAAGGAAGAGAAGGCCACATTGTCAAATATCAATGTTGAAATACCAGTTGGCAGCTTAGTTGCAATTATTGGAGGTACCGGAGAAGGGAAAACATCGCTTATTTCAGCAATGCTTGGAGAGCTACCTCTTGTATCTGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCTACTgtccgtgaaaatatattatttggttcaaaattcGATCATGGACGGTATTGGAAGGCTATCGATGTCACTTGTTTGGAACATGATCTCAACTTTTTACCTGGACGTGATTTTACCGAGATTGGAGAAAGAGGCGTCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCTTTAGCTAGGGCTGTATACTCAAATTCagatgtatatatatttgatgatCCTTTAAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGGGCTGCAAGGAAAAACAAGGGTTCTTGTCACCAACCAGCTTCATTTTCTCCCTCAGGTGGATAAAATTATTCTGGTTAATGAAGGCATGATTAAGGAACAAGGAACGTTTGAGGAGTTGTCGAAATGTGGTCCTCTATTTCAGAAACTAATGGAAAATGCAGGGAAAATGGAACAAGAAGTAGATAGTAACGAAGATACAGATAGTCACGAAAAGGCTGATGATTTACCCTTGAATAATGAGGCAATTGTAGAGTTACCAAATGATACAAGCTATGAGAAGAAGGGAAAATTGCGAAAATCGGTACTTGTTAAGAAAGAAGAGAGGGAGACAGGCGTGGTTAGTTGGAAAGTTTTAACGAGGTACACATCTGCTTTGGGAGGACTGTGGGTAGTTTCTATACTTTTTGCATGCTACACATTAACAGAAGCTCTTCGAATTTCAAGTAGTACATGGTTAAGTGTGTGGACATCTCAAGATTCAACTGCTGCTTCTCGAGCAGGATATTTTCTTATCATCTATGCAATTTTCTCATTTGGACAGGTATCTGTGGCACTAGCAAACTCTTATTGGTTGATCATTTCAAGTCTTCGTGCTGCGAGAAACTTGCACGATGCAATGCTAGATAAAATCCTACGTGCTCCAATGGTATTCTTCCAGACTAATCCTGTCGGACGCATAATTAATAGATTTGCGAAAGACACGGGAGACATTGATACCaatgtttttaatttgatgAATATGTTTCTGGGGCAAGTATGGCAACTACTTTCAACATTTGTTCTTATAGGCACTGTGAGCACCATATCCCTGTGGGCCATATTGCCACttctgatatttttttatgctgCTTATATATACTACCAGAGCACAGCTCGAGAGGTAAAGCGCATGGATTCCATTACACGATCGCCTGTTTATGCACATTTTGGAGAATCATTGAACGGTTTGTCGAGCATTCGGGCTTACAAAGCGTACGACAGGATGTCAAACATCAATGGAAATTTCATGGATAACAATATCAGATTTACTCTTGTGAATATTAGTTCGAACCGTTGGTTAACCATAAGGTTAGAAAGTTTAGGAGGCCTCATGATTTGGTTGATAGCAACATTTGCCGTCTTACAAAATGCAAGATCTGAAAACCCTGCAATGATTGCATCTACAATGGGTCTACTTCTCAGTTACACATTAAACATAACAAATCTCTTGAGTGGTGTACTTAGACAAGCGAGTAGAGCTGAAAACAGTTTAAATTCGGTCGAACGTGTTGCTACGTATATAAATTTAGAAACCGAGGGTCAAAGTATAATTGAGACAAACCGTCCACCACCAGGATGGCCAACAAAAGGATCAATTGAGTTTGAGAATGTTGTTCTGAGGTATAGGCCGGAACTTCCTCCGGTCCTACACGGATTGTCCTTTGTGGTGCCTTCAACTGAGAAGATAGGTGTAGTTGGAAGAACTGGTGCAGGAAAGTCTAGCATGCTTAATGCATTATTCCGGATTGTTGAACTACAAAGTGGAAGAATCATTATTGATGGTTATGATATTTCTACATTCGGACTAGTAGATTTGCGAAGAGTTCTTACTATCATACCACAGTCGCCAGTACTTTTCTCTGGTACTGTTCGTTTCAATCTCGATCCATTTAATGAACACAATGATGCTGACCTATGGGAAGCTTTGGAAAGGGCACACTTGAAAGATGTAATAAGAAGAAATTCACTTGGTCTAGATGCTCAGGTTTCTGAAGGAGGTGACAATTTCAGTGTTGGACAAAGGCAACTATTAAGTCTAGCTAGAGCATTGCTAAGAAGATCTAAGGTTCTTGTTCTTGATGAAGCTACGGCTGCTGTAGATGTTAGAACCGATGCACTTATACAGAAAACTATTAGACAAGAATTTCATTCCTGCACAATGCTAATCATTGCACATAGATTGAATACAGTTATCGACTGCAATCGGATTCTTTTGCTAGATGCTGGCAAGGTTCTCGAATACAATTCACCTGAGAAACTCTTACAAAATGAAGAAACTGCATTCTACAAAATGGTTCAAAGTACTGGACCTGCAAATGCCGAGTATTTATGTAGCTTAGTGTTTGAAAGAAAAGAGAACAATTCAAATGAATATAACAAGGAGTCGGAAAACCATCTGAGACAGTTAGCATCTACAAATTGGGCTGCTGCTACACAATTTGCAATATCTTCTAGCCTTTCTTCTTTACATCAACATCTTCAAAGTCCAAATACTAAAGACAATAAAGACATTCTTAATAGAACAAAGGATGCAGTAATTACACTTCAAGAAGTTCTAGAAGGAAAGCATGATGAAACTATAGAAGAGACATTGACTCAATATCATGTTCCTAGAGATAGATGGTGGTCTACTCTCTATAAAGTTATTGAAGGTCTAGCTCTCTTGATCAAGTTGCCTCAAGACAACTTTCAACAATTAGAACCTGATTTTGAAGGGAGATCATTTGACTAA 4851 0.3783 MGFEPLIWYCKPEPNSIWENIVDSAFGSYTPCAINTLVISTSNLVLMCLCLYRIWLIAFNAKAQRFCLKSNYYNYILGMLASYCAFQPLLRLFTGNSAFNLNEETDFAPFEITSLIIESLTWFSMIILILLETKIYVRQFRWLVRFGVIYVLVGDIVMLDLILSVKDYSSRSSLYLYISTIICQVLFGTLLLVYIPNLVPYSGHTTMQAEIPDNGEYEPLCGDDQVCPEMRASFLSRLSFGWITPLMKQGYRKPVTEKDVWKLDKWDQTETLNEKFQKCWNTEFESSNPWLLRALNSSLGKRFWFGGIFKIGNDLSQFVGPILLNHLLSSMQNGDPSWIGYIYAFSIFVGVSVGVLCEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTHESRKKFSMGKLMNMITTDANALQQICQQLHGLWSAPFRITIAMVLLYQQLGVASLLGALMLVLIIPLQTFVISKMRKLTKEGLQQTDKRVGLMNEILSAMDTVKCYAWETSFQSRVQSIRHEELSWFRKAQLLYALNSFILNSIPVLVTVTSFGMFTLLGGELTPARAFTSLSLFSVLRYPLNMLPNLLSQVANANVSLQRLEELFSAEERNLQQNPPIVPGLPAISIKNGDFSWDPKEEKATLSNINVEIPVGSLVAIIGGTGEGKTSLISAMLGELPLVSDGNATIRGTVAYVPQISWIYNATVRENILFGSKFDHGRYWKAIDVTCLEHDLNFLPGRDFTEIGERGVNISGGQKQRVSLARAVYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEGLQGKTRVLVTNQLHFLPQVDKIILVNEGMIKEQGTFEELSKCGPLFQKLMENAGKMEQEVDSNEDTDSHEKADDLPLNNEAIVELPNDTSYEKKGKLRKSVLVKKEERETGVVSWKVLTRYTSALGGLWVVSILFACYTLTEALRISSSTWLSVWTSQDSTAASRAGYFLIIYAIFSFGQVSVALANSYWLIISSLRAARNLHDAMLDKILRAPMVFFQTNPVGRIINRFAKDTGDIDTNVFNLMNMFLGQVWQLLSTFVLIGTVSTISLWAILPLLIFFYAAYIYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMSNINGNFMDNNIRFTLVNISSNRWLTIRLESLGGLMIWLIATFAVLQNARSENPAMIASTMGLLLSYTLNITNLLSGVLRQASRAENSLNSVERVATYINLETEGQSIIETNRPPPGWPTKGSIEFENVVLRYRPELPPVLHGLSFVVPSTEKIGVVGRTGAGKSSMLNALFRIVELQSGRIIIDGYDISTFGLVDLRRVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFHSCTMLIIAHRLNTVIDCNRILLLDAGKVLEYNSPEKLLQNEETAFYKMVQSTGPANAEYLCSLVFERKENNSNEYNKESENHLRQLASTNWAAATQFAISSSLSSLHQHLQSPNTKDNKDILNRTKDAVITLQEVLEGKHDETIEETLTQYHVPRDRWWSTLYKVIEGLALLIKLPQDNFQQLEPDFEGRSFD 1616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00185 1616 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Tsu03g00185 1616 SMART AAA_5 1265 1444 IPR003593 -
Tsu03g00185 1616 SMART AAA_5 642 822 IPR003593 -
Tsu03g00185 1616 CDD ABCC_MRP_domain1 615 815 - -
Tsu03g00185 1616 Coils Coil 1488 1508 - -
Tsu03g00185 1616 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524
Tsu03g00185 1616 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 617 839 IPR003439 GO:0005524
Tsu03g00185 1616 ProSitePatterns ABC transporters family signature. 1376 1390 IPR017871 GO:0005524
Tsu03g00185 1616 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu03g00185 1616 CDD ABC_6TM_ABCC_D2 918 1214 IPR044726 GO:0140359
Tsu03g00185 1616 Pfam ABC transporter transmembrane region 304 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu03g00185 1616 Pfam ABC transporter transmembrane region 920 1181 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu03g00185 1616 Gene3D ABC transporter type 1, transmembrane domain 282 600 IPR036640 GO:0005524|GO:0016021
Tsu03g00185 1616 Gene3D ABC transporter type 1, transmembrane domain 880 1220 IPR036640 GO:0005524|GO:0016021
Tsu03g00185 1616 Gene3D - 1222 1475 IPR027417 -
Tsu03g00185 1616 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1239 1473 IPR003439 GO:0005524
Tsu03g00185 1616 Pfam ABC transporter 1256 1404 IPR003439 GO:0005524
Tsu03g00185 1616 Coils Coil 574 601 - -
Tsu03g00185 1616 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 38 1494 - -
Tsu03g00185 1616 CDD ABCC_MRP_domain2 1237 1457 - -
Tsu03g00185 1616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1229 1472 IPR027417 -
Tsu03g00185 1616 Gene3D - 613 847 IPR027417 -
Tsu03g00185 1616 SUPERFAMILY ABC transporter transmembrane region 918 1219 IPR036640 GO:0005524|GO:0016021
Tsu03g00185 1616 SUPERFAMILY ABC transporter transmembrane region 289 591 IPR036640 GO:0005524|GO:0016021
Tsu03g00185 1616 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Tsu03g00185 1616 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 38 1494 - -
Tsu03g00185 1616 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 920 1202 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu03g00185 1616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 838 IPR027417 -
Tsu03g00185 1616 Coils Coil 833 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00185 Tsu-Chr3 1494342 1503874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00185 599 855 Calmodulin-binding Proteins AT2G36910 27.007 4.66e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00185 - K05665 mtr:MTR_3g011820 3002.62