Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00182 ATGAGTACAGAAGCTCAAACAGTAGTGGTGATCCAAGATGCATCAAGAGATGTTGGTTTAAAGGCAATCGAAAAGGCCCTCAAAAAGTTATCAGTAAAAGCTGGAGATCAGCTTATAATTATTGCCATTTTTAATTGGTTTAGCAGCCCTAtgGGTTACATGGTCTCAGTTGATTCAAGTTATTTTGTTTCATCCAACAAGAAAATCATTTCAGAAAACCTTACCAGAAGAAAGAATGACTATCCTATGAACCGATACATCAACAAACTCTCTGATTACTGTCAAATGAATGAGATTGAATTCCAACTAGAAGTGCATGCAGGACCAGCTTCACAGGTTATTTCTGATGCTGCAGCAAAATTTCAGCCAACAACTTTGATACTTGATAAACAGATCCACAGAAACATGAAGAGTTTTAAGGACAGTATCCCTTGTGGTATGTATAGGATAACAAGTGACAACTCCCTTGAAAAGTTGAAAGATCCAAAATCAACAGCTACCAAACTTTCTGAAAGGCAAGAAAATATAAGCTATTCAGAAATGATACCGGGAAGTGAAGATGATGGAGCTTCTCTTCAGATGTCCAAGTCTTCGTCTACTGATCTTTTCACGTCGACCGGAGTTTCAAGTCAGTATAGTACTGATGCCTCGACTTCAAGCATTGGAAGTTCACAATATGTCCTTCAAAAATACCGAATTGGGGAGTTTTTTCCTGAACAACAAAAACAAGGGAGACAATCGCTATTTCATATTTCTGGAATTCAAGAAACAAACCAAACAGAAGTTATTCATATGGAGGAAGACTTTACAAATCCAGTTTGTTCTGTGTGTAATaataaaagattgaaaattgGATCGAAAAGAGAGTTCAGTTACTTAGATCTATACACTGCTACACAAGGATTTTCTGCTAAGAACTTTCTGTCAGAAGGTGGGTTTGGAGCTGTTTACAAAGGACAACTTGATGGAATGCCAATTGCTGTTAAGCAACATAAAAGTGCAAGCTTCCAAGGAGAGAAGGAATTTCGGTCTGAAGTCAATGTACTTCGAAGAGCAAGACATGAGAATGTCGTCATGCTTCTAGGTTCATGTTCAGAAAGAAATAATAGGCTTCTTGTTTATGAATATGTCTGCAATGGTTCACTTGATCAACATCTATCAGAACACTCTAGGTCACCTCTTACTTGGAAAGACAGGATCAAAGTAGCTATTGGAGCAGCCAAAGGCTTACTATACTTGCACAAAAATAGCATAATACACAGAGATGTTAGACCAAACAATATCCTTGTAACACATGATCTCCAACCATTGATAGGAGATTTTGGACTAGCAAGAACTCACAACAAAGACTTCACACACTCGACGGAAGTTGTTGGTACCTGGGGGTATTTGGCGCCAGAATACGCTGAATATGGCAAAGTGTCAAGTAGAACAGATGTATATTCTTTTGGAGTCGTTCTACTACAACTTATCACTGGAATGAGAACTACAGACAAAAGACTCGGAGGAAGAAGCCTCGTTGGATGGgcaAGGCCACTTTTAAAAGAGAGAAATTATCCAGATCTAATAGATGAGAGGATCATTGATACTCATGATTACCATCAATTATTTTGGATGATACGACTAGCTGAGAAATGTCTAAGCAGGGACCCTAAGAAAAGACTAACTATGGTTGAGGTTGTTAATGCTTTGACCGACATTTCCGACGGCAACACATGTGTCATTGGAACAGGCGATTACACCCCTGCAATGTCTGATTCATCCTATACTAGTGAACCAGAATTTGATGAAAATGAAGATGAGAATGGACCTTATGAGGATGAATTCGGTGAGTTACTAAGCACCATTTCAGAAACCACAGAAGGCAGTGATTACACTATTCAGATGAGGCATATGAATGTGAGGCAGCCACCATCTCCTCCAATTAAAAACTTCTATTCAAGTGGCTCAAGCTCATTTCAGTTTTCTGATGAATCAAATAGTGACTATGAAGCACATAATGAAAAGAGTATGGAATACCAATATCCAAAGTTGGTTTAA 2040 0.3809 MSTEAQTVVVIQDASRDVGLKAIEKALKKLSVKAGDQLIIIAIFNWFSSPMGYMVSVDSSYFVSSNKKIISENLTRRKNDYPMNRYINKLSDYCQMNEIEFQLEVHAGPASQVISDAAAKFQPTTLILDKQIHRNMKSFKDSIPCGMYRITSDNSLEKLKDPKSTATKLSERQENISYSEMIPGSEDDGASLQMSKSSSTDLFTSTGVSSQYSTDASTSSIGSSQYVLQKYRIGEFFPEQQKQGRQSLFHISGIQETNQTEVIHMEEDFTNPVCSVCNNKRLKIGSKREFSYLDLYTATQGFSAKNFLSEGGFGAVYKGQLDGMPIAVKQHKSASFQGEKEFRSEVNVLRRARHENVVMLLGSCSERNNRLLVYEYVCNGSLDQHLSEHSRSPLTWKDRIKVAIGAAKGLLYLHKNSIIHRDVRPNNILVTHDLQPLIGDFGLARTHNKDFTHSTEVVGTWGYLAPEYAEYGKVSSRTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLKERNYPDLIDERIIDTHDYHQLFWMIRLAEKCLSRDPKKRLTMVEVVNALTDISDGNTCVIGTGDYTPAMSDSSYTSEPEFDENEDENGPYEDEFGELLSTISETTEGSDYTIQMRHMNVRQPPSPPIKNFYSSGSSSFQFSDESNSDYEAHNEKSMEYQYPKLV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00182 679 SMART tyrkin_6 302 564 IPR020635 GO:0004713|GO:0006468
Tsu03g00182 679 MobiDBLite consensus disorder prediction 640 660 - -
Tsu03g00182 679 ProSitePatterns Tyrosine protein kinases specific active-site signature. 418 430 IPR008266 GO:0004672|GO:0006468
Tsu03g00182 679 Pfam Protein tyrosine and serine/threonine kinase 305 564 IPR001245 GO:0004672|GO:0006468
Tsu03g00182 679 PANTHER OS01G0253100 PROTEIN 20 591 IPR045271 GO:0004714|GO:0006468
Tsu03g00182 679 CDD STKc_IRAK 308 567 - -
Tsu03g00182 679 MobiDBLite consensus disorder prediction 161 196 - -
Tsu03g00182 679 MobiDBLite consensus disorder prediction 584 604 - -
Tsu03g00182 679 Gene3D Transferase(Phosphotransferase) domain 1 377 576 - -
Tsu03g00182 679 PANTHER TYROSINE KINASE FAMILY PROTEIN 20 591 - -
Tsu03g00182 679 Gene3D Phosphorylase Kinase; domain 1 274 376 - -
Tsu03g00182 679 MobiDBLite consensus disorder prediction 633 679 - -
Tsu03g00182 679 SUPERFAMILY Protein kinase-like (PK-like) 285 564 IPR011009 -
Tsu03g00182 679 ProSiteProfiles Protein kinase domain profile. 302 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00182 Tsu-Chr3 1474111 1479369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00182 290 571 Trihelix Transcription Factor Family AT1G70460 47.157 1.23e-79 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Tsu03g00182 PK_Tyr_Ser-Thr 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00182 - - gmx:100794450 867.84