Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00177 ATGTCAaccaagaagaaacaaaaacGCAAACACACCGATAGCGATGAAGACGACGACGTTTTCTACTACCGCTTCTGTGCTTCATCATCAATCCctaacaccaccaccaccgccacCACATCGAATAACCAAATccaatcaaaatcatcaaacaaCAAAGGATCATCGATGATATCAACAACAGGTGAATCATTAGCACCATCAAAATCAACGCTATACGTTTCAAATCTCGATTACTCCCTAACAAACTCCGATCTCCACACTCTCTTCTCGACTTTCGGACGTATTGCGCGTGTAACGGTTCTTAAAGACCGTCACACGCGCCTCAGCCGTGGTGTTGCGTTTATCCAATTTGTTTCTCGTCAGGATGCGCAACGCGCTGTGACTGAAATGAATAAGAAGATTTTGAATGGACGGACTTTGACTGCGTCTATTGCTGCTGATAATGGACGTGCTCCGGAGTTTATTCGGAAGAGAGTGTATAATTCGGAGACTGGTTTGTGTTTTGAGTGTGGGGAGCATGGTCATTTGTCTTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGGAACGGCCGCAGCCTAAGAAACCGAGGCGTGGGTTTGGTGGGTTTAAGGATAGAGTgggggaggaggaggaggatgatGAGGAGGAGGAAGAGGGTGGGGGGCGGTTTGACGAAGATAATTGGGCTTCTGCTGTGGATAATGGAGTGTGTGAGAGAATGACACTTCATATTGAAGCTGATGCAAATGCAATGGTGGATTTGTTTAAGTTGTTGAGATCTTGGAAAACATCAAATTGCAGCCACAATTTGTTCTTGTGGAAATCACTGGGCACACAGTTCATAAAACCTCACTCTAATTTGCTCGTACTTCATTACCTAAAAATCTCACTCCAATTTTCTCCttcattcatcatcttcatttctttcaaCTTTCACAAGTCAACTACTTCCACAAGAAAATGA 969 0.3942 MSTKKKQKRKHTDSDEDDDVFYYRFCASSSIPNTTTTATTSNNQIQSKSSNNKGSSMISTTGESLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVSRQDAQRAVTEMNKKILNGRTLTASIAADNGRAPEFIRKRVYNSETGLCFECGEHGHLSYECPKNQLGPRERPQPKKPRRGFGGFKDRVGEEEEDDEEEEEGGGRFDEDNWASAVDNGVCERMTLHIEADANAMVDLFKLLRSWKTSNCSHNLFLWKSLGTQFIKPHSNLLVLHYLKISLQFSPSFIIFISFNFHKSTTSTRK 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00177 322 SUPERFAMILY RNA-binding domain, RBD 66 154 IPR035979 GO:0003676
Tsu03g00177 322 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Tsu03g00177 322 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 249 - -
Tsu03g00177 322 Gene3D - 158 196 - -
Tsu03g00177 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 141 IPR000504 GO:0003723
Tsu03g00177 322 MobiDBLite consensus disorder prediction 183 229 - -
Tsu03g00177 322 CDD RRM_ZCRB1 69 146 IPR034219 -
Tsu03g00177 322 SMART rrm1_1 71 144 IPR000504 GO:0003723
Tsu03g00177 322 MobiDBLite consensus disorder prediction 209 224 - -
Tsu03g00177 322 Pfam Zinc knuckle 167 183 IPR001878 GO:0003676|GO:0008270
Tsu03g00177 322 SMART rrm2_1 71 144 IPR003954 GO:0003676
Tsu03g00177 322 MobiDBLite consensus disorder prediction 36 63 - -
Tsu03g00177 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
Tsu03g00177 322 ProSiteProfiles Zinc finger CCHC-type profile. 168 183 IPR001878 GO:0003676|GO:0008270
Tsu03g00177 322 MobiDBLite consensus disorder prediction 189 208 - -
Tsu03g00177 322 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 249 IPR044598 GO:0000398|GO:0005689
Tsu03g00177 322 SUPERFAMILY Retrovirus zinc finger-like domains 158 184 IPR036875 GO:0003676|GO:0008270
Tsu03g00177 322 Gene3D - 34 228 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00177 Tsu-Chr3 1441139 1446468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00177 70 146 Eukaryotic Initiation Factors Gene Family AT1G49760 40.260 8.68e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00177 K13154 - gmx:100814914 283.108