Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00172 ATGGCAGAAAAAGCAGTATTATCGGCCTTGGGGGAAGTTTTCCAACTTCTTAAGAAAGAAACAAATCTTCTGCAAACTGTACACACAGATTTTTCAGATATCAAAGATGAACTAGAAAGCATTCAAGTCTTCCTCAAAGATGCAGATAGAAGGGCAGCAGATGAAGCAGACACCAACGACGGAATAAGAACGTGGGTGAAGCAGCTGAGAGAAGCATCATTTCGCATTGAAGACGTCATTGATGAATACCTTCGGCTGATCCATAGGCCTCCTGGATTCGGATCTTTAGTCTGCAAGATTACAAGCctaaacaaaacttggattccACGTCATAAAATTGTATCAGAGATTCAGGACATTAAGTTGTCAATTTGTGGAATCAAGGAAAGAAGCAAGAGGTATAACTTTCAAACTTCACATGAACAAGGTTCCTCAAGCAGCAGAAACAACACTGAAGAGACAGAAAATGGAAGATGGCGTGATCCTCGACTGTCTTCCCTTTTCGTTGAAGAAACAGAAATTGTAGGATTTGAAGGCCCAACAGAAGAACTATTTGGTTGGTTATTGGAGGGTGCAGCTGAGCGCACAGTGATTTCAGTGGTAGGAATGGGGGGCCTAGGAAAAACCACTCTTGCCAAGCAAGTTTATGACAGCCAAAAGGTAACAACACAATTTGATTGTCGGGCTTGCATCACAGTTTCTCAATCATACACTGTGAGAGGGTTACTGATAAAAATGATGGAGCAATTTTGTAAGGAAACTGAAGACCCTCTTCCAAAGAAGTTACGCAAAATAGATGATCAGTCATTGGTTATAGAGGTAAGGAAATACCTAGAACATAAGAGATATCTTATTTTCTTTGATGATGTTTGGCAAGAAGATTTTTCCGACCAGGTTGAATTTGCCTTGCCAAATAACGACAAAGGTAGTAGGATCATAATCACTACTAGAATGATGCAAGTTgcagattttttcaataaatcctTTCTAGTTCATGTTCACAACTTGCAACTTTTGACTCCAAACAAAGCTTGGGAACTCTTCTGCAAGAAAGTATTTAGATCTGAAGTTGGTGGGCGTTGTCCACCAGAGCTTGAAGCTTTGGCAAAAgaaattgttcaaaaattcaaGCAGCTACCACTGGCAATTGTAGCCATTGGTGGTCTACTCGCAACAAAATCCAAAACCATGATTGAATGGAAAAACGTGAATGAAAATCTGAGCCTCGAATTGGGACGTAATGCCCATTTAACGAGTCTAACAAAGATTTTGTCGCTGAGTTATGATGGCCTGCCTCAATACTTGCAACCATGCATTTTGTATTTTGGTTTATACCCAGAGGACTATGGCATTCATCATGAGAAATTAATTCGACAATGGATAGCTGAAGGGTTTGTTAAACCTGATGAGAGAAGAACTCTGGAGCACGTTGCAGAGGATTACTTGTCTGAATTGATTCAGAGAAGTCTGGTTCAAGTCTCGGAATTTAACTTTGAAGGGAAAGCTCATACATGTCACGTCCATGATTTATTGCGTGAAGtactcattaaaaaaatgaagggTTTAAGTTTCTGTCATTGTGTGCATGCAGATAATGAATCACTCGCAGGATGA 1614 0.3848 MAEKAVLSALGEVFQLLKKETNLLQTVHTDFSDIKDELESIQVFLKDADRRAADEADTNDGIRTWVKQLREASFRIEDVIDEYLRLIHRPPGFGSLVCKITSLNKTWIPRHKIVSEIQDIKLSICGIKERSKRYNFQTSHEQGSSSSRNNTEETENGRWRDPRLSSLFVEETEIVGFEGPTEELFGWLLEGAAERTVISVVGMGGLGKTTLAKQVYDSQKVTTQFDCRACITVSQSYTVRGLLIKMMEQFCKETEDPLPKKLRKIDDQSLVIEVRKYLEHKRYLIFFDDVWQEDFSDQVEFALPNNDKGSRIIITTRMMQVADFFNKSFLVHVHNLQLLTPNKAWELFCKKVFRSEVGGRCPPELEALAKEIVQKFKQLPLAIVAIGGLLATKSKTMIEWKNVNENLSLELGRNAHLTSLTKILSLSYDGLPQYLQPCILYFGLYPEDYGIHHEKLIRQWIAEGFVKPDERRTLEHVAEDYLSELIQRSLVQVSEFNFEGKAHTCHVHDLLREVLIKKMKGLSFCHCVHADNESLAG 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00172 537 Gene3D - 428 519 IPR036388 -
Tsu03g00172 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 442 IPR027417 -
Tsu03g00172 537 CDD RX-CC_like 2 129 IPR038005 -
Tsu03g00172 537 PANTHER - 30 528 - -
Tsu03g00172 537 Pfam NB-ARC domain 180 429 IPR002182 GO:0043531
Tsu03g00172 537 Pfam Rx N-terminal domain 5 90 IPR041118 -
Tsu03g00172 537 MobiDBLite consensus disorder prediction 137 152 - -
Tsu03g00172 537 PRINTS Disease resistance protein signature 197 212 - -
Tsu03g00172 537 PRINTS Disease resistance protein signature 376 390 - -
Tsu03g00172 537 PRINTS Disease resistance protein signature 277 291 - -
Tsu03g00172 537 MobiDBLite consensus disorder prediction 136 158 - -
Tsu03g00172 537 Gene3D - 161 330 IPR027417 -
Tsu03g00172 537 Gene3D - 339 427 IPR042197 -
Tsu03g00172 537 Gene3D - 4 114 - -
Tsu03g00172 537 PANTHER DISEASE RESISTANCE PROTEIN RP 30 528 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00172 Tsu-Chr3 1412767 1414380 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00172 169 357 WRKY Transcription Factor Family AT4G12020 27.041 1.28e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00172 K13457 - gmx:100801561 738.028