Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00158 ATGAAAAAAACATCGAATCCGGACGGTTTGTCTATGGCTAGGATAAGTCTTGGATCCAAGGGAGACAAGATACAACTCTTAACTAACCATTTTAGAGTTGGCCTTAGCAAGAACTATGGCTACTTCTATCACTATAATGTCGCTTTATGTTATCAAGATGGACACCCGGTTGAAGTGAAAGGTGCGAGGCGAAAAGTCATAGACAAACTTTGTGAAACGTATGATGTATTAAGAAACAAGAATTTTGCATATGATGGCGAAAATAGCTTATTCACTCTTGGTTCTCTACATCATAATAAACAAGAATTCATTGTTGTGTTAGAAGAAGTTTCATCAATAAGGGTTGGAAGCAACCCCGATGAAGCAACCAAGAAAATGAGGTGTCAATCTCAGTCCAAAACTTTTAAGGTTGAGATTACTTATTTAGCTAAAATCCCATTACAAGAGATTGCGAATGTAGTACAAGGTCAAGAATCTGAGCATCATCAAGAATTATTGAATGTTCTAGACGTAATATTGAGCCAGAATGCCACAAAGCAGGGATGTCTCCGTATTCGCCAATCATACTTTCACGATAATCCAAGGAATATTACTAATATCGATGGCGGTGTTCAATGTTGTTGCGGTTACCATTCCAGCTTCAAAGTCACACAAAAGGGTTTATCTCTCAATGTTGATGTGTCAACTACATTACTTCTAAAGCCTGGTCCTGTAGTGGATTTCCTTCTCCAGAACCAAAATGTTCAGCAAACAAACTTGATTGATTGGACCAAGgCAAGAAGAATGCTGAAAAATCTTAGAATCAAAGCTAACAATAGAGAGTACAAAATCACTGGACTAAGTGAAATGTCTTGCAGGACACAAAAatttttaatgaaaaatggaAAAGATGTTAATGGTCAAGTGAAATTAAGAGAAATAACAGTTTATGAATActacaaacaaaagaaaaagattgaaCTCCACTGTTCTATTGATATGCCATGCATCAATATTGGCAAATCAAAGAAGCCAATTTATTTTCCTATTGAGTTATGCACATTAGTACCGTTACAACGATACACTAGGGTACTGTCAAATAAGCAAAGGGCTCAATTTATGTTGGAGTCGAAGCATAATCCTCATGAAAGAAAAGAAGCTTTGCAATATTCTTTAAAAAACAGTAGATATGACTTTGAGCCTGTGTTTCGCTCATTCGGGATTACTATTGAACCTAGTTTTACTCAAGTTGATGGTCGTGTTTTGCAAGCTCCAACGCTTGTTGTCGGAAACGGGCATAACTTGTGTCCCCGAAATGGAAGCTGGAATTTCACTGATAagAAACTAGTTGAACCTGTCGAGATTAAGCGTTGGGCCATTGTAAACTTTTCATCATGGTGTGATATAAAACATTTGGGAAGTATCATTAAAAAATGCTCTGGAATGAAAGGGATGCTCATACATCGTCCGTTCGATGTATTTGAAGAGGACAGTCGCTATAGTAGTGAGTCGCCATCTTCTAGGGTTGCTAGAATGTATGAAAAGTTAAAGGCCAAGATGCCTGGACCCCCTATGGATCCTCCGGCTCAACTTCTTTTGTGTATCTTTCCTGTTAAGAATTGTGAGCTTTATGGTCCTTGGAAAAGGAGATGTCTTGTTGACGAAGGAATTGCAACACAATGCGTTGCtccaacaaaatatattaatgatcaTTACATTAATAATGTACTACTGAAAGTTAATGCAAAGCTTGGTGGGATCAATTCCCTTTTGTTATCCGAAGTTTCGCGTTCCATACCATTGTTTTCAAACATACCTACATTGGTTATTGGAATGGATGTTTCACATGGATCTTCGCATCAATTAAATGTACCGTCCATTGCTGCGGTTGTGAGCTCGAGATATTGGCCTCAAATTTCACGTTACAAAGCTGTAGTCCGCGCACAGCCGTCAAAAGTAGAGATGATTGCATCTCTATTTAAGCCGGTTTCAGATACTAAGGATGATGGTATCATCAGCGAGTTGCTTAAGGACTTTCGCGCAACTTCAGGAATGAAGCctaaacaaattataatttttagggATGGAGTGAGTGATTCACAGTTCAATCAGGTTCTCaacattgaattgaatgaaatCATAAagGCATGCAAACATTTAGATGAAAATTGGTGTCCAAAGTTTACTGTGATTGTTGCTCAGAAGAATCACCATACTAGATTCTTCAAACCCAATGCTCCTCAAGAAAATGTTTCACCTGGAACTGTTATAGATAACACTATATGTAATCCCAAAAACAATGACTTCTACATGTGTGCACATGCTGGAAGGATTGGTACAAGTCGCCCTACTCATTACCAtgttttatttgatgaaattgGATTCTCAGCAGATAATTTGCAAGAATTAGTGCATTCTCTATGTTATGTgCACCAGAGGTGCACAAGTGCCATATCAATAGTTGCACCAATATATTATGCTGACCTAGCAGCTGCTCAGATGGcacaaattataaaatttgatgagtCAGATGCTCTTTCGAGCCACAATGAATCCACCTCTGCAGATATATCTCAAGTTCTTGAGTTACCGCGTCTTCATGAACGAGTTGCTGAttctatgtttttttGGTGGAGTAGAGAGGACAAAAGGGATCTAGACAAGGCAAAGGGAGGGCACAGAGAGGACCTTGGCTTAAACAACCACGTACGTCTCAACTACGAATGCGCAGGAATAAAGGTGGCAATGCGCCGCAACAGAAAAAAAGCATCGAATAATGTAGCTTGA 2766 0.3706 MKKTSNPDGLSMARISLGSKGDKIQLLTNHFRVGLSKNYGYFYHYNVALCYQDGHPVEVKGARRKVIDKLCETYDVLRNKNFAYDGENSLFTLGSLHHNKQEFIVVLEEVSSIRVGSNPDEATKKMRCQSQSKTFKVEITYLAKIPLQEIANVVQGQESEHHQELLNVLDVILSQNATKQGCLRIRQSYFHDNPRNITNIDGGVQCCCGYHSSFKVTQKGLSLNVDVSTTLLLKPGPVVDFLLQNQNVQQTNLIDWTKARRMLKNLRIKANNREYKITGLSEMSCRTQKFLMKNGKDVNGQVKLREITVYEYYKQKKKIELHCSIDMPCINIGKSKKPIYFPIELCTLVPLQRYTRVLSNKQRAQFMLESKHNPHERKEALQYSLKNSRYDFEPVFRSFGITIEPSFTQVDGRVLQAPTLVVGNGHNLCPRNGSWNFTDKKLVEPVEIKRWAIVNFSSWCDIKHLGSIIKKCSGMKGMLIHRPFDVFEEDSRYSSESPSSRVARMYEKLKAKMPGPPMDPPAQLLLCIFPVKNCELYGPWKRRCLVDEGIATQCVAPTKYINDHYINNVLLKVNAKLGGINSLLLSEVSRSIPLFSNIPTLVIGMDVSHGSSHQLNVPSIAAVVSSRYWPQISRYKAVVRAQPSKVEMIASLFKPVSDTKDDGIISELLKDFRATSGMKPKQIIIFRDGVSDSQFNQVLNIELNEIIKACKHLDENWCPKFTVIVAQKNHHTRFFKPNAPQENVSPGTVIDNTICNPKNNDFYMCAHAGRIGTSRPTHYHVLFDEIGFSADNLQELVHSLCYVHQRCTSAISIVAPIYYADLAAAQMAQIIKFDESDALSSHNESTSADISQVLELPRLHERVADSMFFWWSREDKRDLDKAKGGHREDLGLNNHVRLNYECAGIKVAMRRNRKKASNNVA 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00158 921 Pfam Argonaute linker 2 domain 376 421 IPR032472 -
Tsu03g00158 921 Pfam Argonaute linker 1 domain 185 231 IPR014811 -
Tsu03g00158 921 Gene3D - 591 869 IPR036397 GO:0003676
Tsu03g00158 921 Pfam Piwi domain 525 832 IPR003165 GO:0003676
Tsu03g00158 921 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 7 869 - -
Tsu03g00158 921 SMART Piwi_a_2 524 832 IPR003165 GO:0003676
Tsu03g00158 921 CDD PAZ_argonaute_like 235 349 - -
Tsu03g00158 921 Gene3D paz domain 229 354 - -
Tsu03g00158 921 SUPERFAMILY PAZ domain 230 390 IPR036085 GO:0005515
Tsu03g00158 921 SMART DUF1785_2 183 235 IPR014811 -
Tsu03g00158 921 Gene3D - 414 585 - -
Tsu03g00158 921 CDD Piwi_ago-like 394 826 IPR045246 -
Tsu03g00158 921 ProSiteProfiles PAZ domain profile. 273 350 IPR003100 GO:0005515
Tsu03g00158 921 ProSiteProfiles Piwi domain profile. 524 832 IPR003165 GO:0003676
Tsu03g00158 921 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 7 869 - -
Tsu03g00158 921 Pfam PAZ domain 239 366 IPR003100 GO:0005515
Tsu03g00158 921 SMART PAZ_2_a_3 236 372 IPR003100 GO:0005515
Tsu03g00158 921 Pfam N-terminal domain of argonaute 23 173 IPR032474 -
Tsu03g00158 921 SUPERFAMILY Ribonuclease H-like 519 830 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00158 Tsu-Chr3 1319018 1325030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00158 14 869 Eukaryotic Initiation Factors Gene Family AT5G43810 33.482 8.48e-151 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00158 K11593 - pop:7486850 1036.94