Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu03g00157 | ATGGGGTCTCAAGTTGTTGGCGATAACAATGAAAACCATTCGCAATTCCAGCCTCTGGCACGGCAAAACTCAGTGTACAATCTTACTCTTGACGAAGTTGAGAGTCAATTAGGCGACTTGGGAAAACCACTAAGTAGTATGAACCTTGACGAGCTTCTGAAAAATGTATGGACTGTTGAGGCAAACCAACCCGTTGGTATGGAGAATGAGAACGTAGCTCAAACCGAACAAGTTGTTTTCCAACATCAGCCTAATCTATCGTTAAACAGTGCATTAAGCAAGAAGACAGTTGATGAGGTTTGGAGAGATATCCAGCAAAACAAAGGTGAAAGGGAGATGAATTCTCAAGAGAGACAATATACTTTGGGAGAGATGACATTAGAGGATTTTTTGGTGGAAGCAGGCGTTGTTTCGGTTGCATCTTCTAATAGAAAGAATACTAACGATCCTAAAGTTGGCGTTGTTGATTCAAATGTACCGTTACCACAGTTTGCACCGCATGGTCCATGGATACAATATGCACAGCCACATTTTCAGCATCCACAACAAAGTGTGATGGCGGCTTATGTTCCAGGCCAAATTATAGCACAGCCGTTGCACATGGCAGCCGGTGCTCCATTCGATGCTGTGCAATATGTAGATGGTCAGGTGGCGATGGGTGCGCCTGTGATGGGAAACTTATCTGATGCAAATAAATCTGCGAGAAAACGGGGACCAGAGAACATGGAAGAGAGGACTGTCGAGAGGAAGCAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCGCGTTCAAGAGCAAGGAAACAgGCATACACAACTGAATTGGAGTTCAAAGTCTCGCGTCTGGAAGAGGAAAATGAAAAGCTGAGGAGGGAGAAGGAGCTTGTGAACATGCTAGCCAACACTCCACCGCCCGAGCCTAAGTGTCAGCTTCGCCGCGTATCATCGGCTACATTCTGA | 960 | 0.4562 | MGSQVVGDNNENHSQFQPLARQNSVYNLTLDEVESQLGDLGKPLSSMNLDELLKNVWTVEANQPVGMENENVAQTEQVVFQHQPNLSLNSALSKKTVDEVWRDIQQNKGEREMNSQERQYTLGEMTLEDFLVEAGVVSVASSNRKNTNDPKVGVVDSNVPLPQFAPHGPWIQYAQPHFQHPQQSVMAAYVPGQIIAQPLHMAAGAPFDAVQYVDGQVAMGAPVMGNLSDANKSARKRGPENMEERTVERKQKRMIKNRESAARSRARKQAYTTELEFKVSRLEEENEKLRREKELVNMLANTPPPEPKCQLRRVSSATF | 319 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu03g00157 | 319 | PANTHER | BZIP TRANSCRIPTION FACTOR | 2 | 317 | - | - | |
| Tsu03g00157 | 319 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 247 | 292 | IPR004827 | GO:0003700|GO:0006355 | |
| Tsu03g00157 | 319 | Gene3D | - | 247 | 301 | - | - | |
| Tsu03g00157 | 319 | MobiDBLite | consensus disorder prediction | 229 | 267 | - | - | |
| Tsu03g00157 | 319 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 2 | 317 | IPR043452 | GO:0003700|GO:0045893 | |
| Tsu03g00157 | 319 | SMART | brlzneu | 245 | 302 | IPR004827 | GO:0003700|GO:0006355 | |
| Tsu03g00157 | 319 | CDD | bZIP_plant_BZIP46 | 249 | 295 | - | - | |
| Tsu03g00157 | 319 | SUPERFAMILY | Leucine zipper domain | 249 | 295 | IPR046347 | GO:0003700|GO:0006355 | |
| Tsu03g00157 | 319 | Pfam | bZIP transcription factor | 249 | 294 | IPR004827 | GO:0003700|GO:0006355 | |
| Tsu03g00157 | 319 | Coils | Coil | 272 | 302 | - | - | |
| Tsu03g00157 | 319 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 252 | 267 | IPR004827 | GO:0003700|GO:0006355 | |
| Tsu03g00157 | 319 | MobiDBLite | consensus disorder prediction | 299 | 319 | - | - | |
| Tsu03g00157 | 319 | MobiDBLite | consensus disorder prediction | 233 | 267 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu03g00157 | Tsu-Chr3 | 1316959 | 1318704 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu03g00157 | 13 | 319 | bZIP Transcription Factor Family | AT3G56850 | 49.841 | 8.91e-80 | 243 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bZIP | Tsu03g00157 | bZIP_1 | 8.6e-13 | CL0018 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu03g00157 | K14432 | - | gmx:100784924 | 419.083 |