Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00156 ATGGATATAGATCTCAGGTTACCCTCTGGTGAACATgataaagaggaagaagaaacgACTACACTTGATAACATGTTGGAAGGTGAAGAAAAATTGCACAATGGAGGTATTGATGGGAGGCATATGGTTGATGCTGGCATCGAAGTACATGCTCTAAATGGTGGAGATTTGAATTCCCCTACGGTTGATATGATGATGTTCAAGGAAGATACAAATCTTGAACCACTTTCTGGCATGGAATTCGAGTCTCATGGGGAAGCTTATTCTTTTTACCAAGAATATGCTCGGTCAATGGGATTCAACACTGCAATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTCATAGATGCAAAGTTTGCTTGTTCCAGATATGGAACCAAAAGAGAGTACGATAAATCCTTCAATCGACCACGAGCACGACAGAACAAGCAAGAATCTGAAAATTCAACTGGTCGAAGATCTTGCTCTAAGACCGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGCCAGATGGGAAATGGGTTATACATAGCTTTGTGAAGGAGCATAATCACGAGCTTTTACCTGCCCAGGCAGTAAGTGAGCAAACAAGAAGAATGTATGCTGTGATGGCCAGGCAGTTTGCAGAATACAAAACTGTGGTTGGTATCAAGAATGAAAAGAATCCGTTCGATAAAGGTCGGAATTTGGGTCTGGAGTTTGGGGAGGCCAAACTTATGcttgatttttttattcagaTGCAAAGCATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAGGATCAACGTCTGAAAAATCTTTTATGGATTGATGCTAAAAGCAGGCATGACTATATCAACTTTTGTGATGTAGTGTCATTTGATACCACCTATGTTAGAAACAAATATAAGATGCCTCTTGCACTTTTTGTTGGGGTGAACCAGCACTACCAATTTATATTACTAGGGTGTGCCTTGATATCAGATGAAAGTGCCGCAACATTTTCTTGGCTATTACGGACATGGCTGAAAGGTGTTGGTGGCCAAGTTCCAAAAGTGATAATTACGGACCATGACATGACTTTGAAGTCAGTTATTTCAGATGTATTTCCTAGTGCTTGCCATTGTGTTTGCTTATGGCACATACTGGGGAAGGTATCTGAAAATTTAgctcatgtaattaaaaaacaTGCGAATTTTatgacaaaatttgaaaaatgcgTATTTAGGTCATTAACCAGTGATGATTTTGACAATAGATGGGAGAAAATTTTGGATAGATTTGAACTTCGACAGGATGAATGCATGCAGTCTTTGTATGAAGATCGCAAGTTATGGGCACCAACATTCATGAAGGATGTGTTTTTAGGTGGCATGTCTACTCCCCAACGATCTGAAAGTGTAAATTCATTCTTTGACAAATATGTTCACAGGAAGACCTATGTACAAGATTTTGTTAAACAGTATGAAACCATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATTCTGATACTTGGAACAAAGTTGCAACATTAAAAACTCCTTCACCTTTAGAAAAGAGTGTTGCAGGGATTTGCACCCATACAGTATTCAAGAAGATTCAAGCTGAGATTATTGGTGCAGTGGCTTGCCATCCTAAACTTGAGAGGCAGGATGAGGCAATCGTTGTTCACAGGGTGCATGATATGGAAACAAGAAAAGACTTTTTTGTTGTGGTGAATGAAGTAAATTCAGAATTGTCTTGTATATGTCGGCAATTTGAatataaaggttatctttgtcGACATGCATTGGTGGTTCTTCAATATTCTGGCCATTCAGTGTTCCCATCTCAATATGTTTTGAAGCGGTGGACAAAAGATGCAAAGATCAGAAATGTAACGGGGGAAGAATCTGAACATATGCTGGCTAGGGTGCAACGATACAATGATTTATGTCATCGATCACTAAAACTGAGCGAAGAGGGATCATTGTCTCAAGATAGTTATGGTATTGCATTCCATGCACTAAATGAGGCGCACAAAAGTTGTGTGAGTGTTAACAATTCTAGCAAGAGTCCTCCAGAAGCTGGTACATCAGGGGCTCATGGTCAGCATTCCATTGAAGAAGATACCCAAAGTAGAAATATGGGaaagtcaaacaaaaagaagaatccaactaaaaagaaaaagGTGAACTCAGAGGCAGAAGTGATGACTGTCGGGGCACTAGACAACTTGCAACAAATGGACAAATTCAGCACAAGAACTGCAGTACTTGAAGGTTATTATGGCGCACAACAGAGTGTCCAGGGAATGTTGAACTTAATGGGACCAACACGCGATGATTACTACGGGAATCAACAGACTCTTCAGGGACTGGGACCAATAAATTCCATACCAACCAGCCACGATGGTTATTATGGTGCACATCAAAGCATGCCCGGTTTGGCACAACTGGATTTTTTGCGAACTGGTTTCACATATGGAATTAGGCAGGATGATCCTAATGTTAGAGCAGCACAGTTACACGAGGATCCATCAAGACACGCGTGA 2532 0.3843 MDIDLRLPSGEHDKEEEETTTLDNMLEGEEKLHNGGIDGRHMVDAGIEVHALNGGDLNSPTVDMMMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQESENSTGRRSCSKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAVMARQFAEYKTVVGIKNEKNPFDKGRNLGLEFGEAKLMLDFFIQMQSMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYINFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFILLGCALISDESAATFSWLLRTWLKGVGGQVPKVIITDHDMTLKSVISDVFPSACHCVCLWHILGKVSENLAHVIKKHANFMTKFEKCVFRSLTSDDFDNRWEKILDRFELRQDECMQSLYEDRKLWAPTFMKDVFLGGMSTPQRSESVNSFFDKYVHRKTYVQDFVKQYETILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGICTHTVFKKIQAEIIGAVACHPKLERQDEAIVVHRVHDMETRKDFFVVVNEVNSELSCICRQFEYKGYLCRHALVVLQYSGHSVFPSQYVLKRWTKDAKIRNVTGEESEHMLARVQRYNDLCHRSLKLSEEGSLSQDSYGIAFHALNEAHKSCVSVNNSSKSPPEAGTSGAHGQHSIEEDTQSRNMGKSNKKKNPTKKKKVNSEAEVMTVGALDNLQQMDKFSTRTAVLEGYYGAQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPINSIPTSHDGYYGAHQSMPGLAQLDFLRTGFTYGIRQDDPNVRAAQLHEDPSRHA 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00156 843 MobiDBLite consensus disorder prediction 678 692 - -
Tsu03g00156 843 MobiDBLite consensus disorder prediction 132 165 - -
Tsu03g00156 843 Pfam SWIM zinc finger 569 602 IPR007527 GO:0008270
Tsu03g00156 843 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Tsu03g00156 843 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 781 IPR031052 GO:0006355
Tsu03g00156 843 Pfam MULE transposase domain 288 380 IPR018289 -
Tsu03g00156 843 SMART 26again6 579 606 IPR006564 GO:0008270
Tsu03g00156 843 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Tsu03g00156 843 MobiDBLite consensus disorder prediction 678 726 - -
Tsu03g00156 843 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 47 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00156 Tsu-Chr3 1302307 1310724 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu03g00156 FAR1 2.5e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00156 - - cam:101505784 1596.64