Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00154 ATGTCTTCCTTCAAATCATATGGAAAAGTCAATGAACTTGAGCAAATGATGTTAGAAGCAAAGAggaaaacaagaaagagaatcaCAATCATAGGCTTATCTTCAATAATCTTTGTTGGTGTTGTAATTGGAGCTGTATTTGGAGTTGTTAACAACAATTCAAAAAATGATCATGACAAtaattcatcacaaaattcagTGACTAATTCTATGAAAGCTGTTTGTGATGTAACATTGTACAAGGATTCATGTTACGAGAGTCTCGGCTCTGTTGTAAACCCGGGTAAAGATATTCAACCTGAAGAGCTGTTTAAACTGTCTATCAATGTCGCATTAACTCATGTGTCTAAAATTATTGAGTATTTCAATGATCATGGtgtttttaaaaacttgatTGGTAATGATAGTAGGAACAAGGAAGCTTTGAAAAATTGTAGGGATCTTTTGGACCTTGCTATTGATCATTTGAATAACTCATTGACTACTTCAGGAGAAAATTCTTCActttttcaagtttttgatgATCTACAAACATGGTTAAGTGCTGCAGGTACATACCAACAAACTTGCATTGAAGGCTTTGAGGATACAAAACAAGAACTTAAGAAAAGTGTAGTAAGCTATCTTAAAAATTCTACAGAATACACAAGTAACAGTCTTGCCATAATTACATGGATTAACAAGGTTTCAAACACTCTCAACTTGAGACGCTTAATGAGTTTACCTTATGAAAATGAATCACCAAAATGGCTTAATTCAAAAGATAGGAAACTACTTGTGACAAAGGATTTGAGATCAAAAGCTGATATAGTTGTTGCTAAAGATGGTAGTGGGAAATATAAAACTATATCTGAAGCACTTAAACATGTTCCTAATAAGAGTAATAAGAGGACTTTGATTTATGTGAAGAAAGGTATTTACTATGAGAATGTTAGAGTAGAGAAGACAAAATGGAATATTATGATTGTTGGTGATGGTATGACTGCTTCTGTTGTATCTGGTAGGCTTAATGTTGTGGATGGTACACCAACATTTTCATCTGCAACATTTGCTGTATTTGGAAGGAATTTCATAGCTAGAGACATGGGTTTTCGCAATACAGCAGGTCCACAGAAACACCAAGCAGTAGCATTAATGACAAGTGCTGATCAAGCAGTTTACTATAAGTGTCACATTGATGCTTATCAAGACACTCTTTATGTTCATTCCAATCGCCAATTCTATAGAGAATGTAACATTTATGGAACAGTTGATTTCATTTTTGGAAATTCAGCAACTGTTATTCAAAATTGTAACATTATGCCAAAGTTACCTATGCATGGACAACAGAACACAATCACAGCACAGGGAAAAACTGATCCTAACATGAACACAGGTATCTCAATTCAATATTGTAACATTGCACCTTTTGGAAACTTGAGCACTGTCCAAACATACCTTGGAAGACCATGGAAGAATTACTCAACCACAGTATACATAAGATCAAGAATGGAAGGTTTTATTAATCCAAAGGGTTGGTTACCTTGGGTAGGAAACTCAGCACCAGATACTATTTTTTATGCAGAGTTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGAGTGAAATGGAAGGGTTTGAAAAATCTTAGTATTAAACAAGCTAATAAGTTTTCTGTTAAGGATTTTGTTCAAGGTGATAGATGGATTTCTGCATCAGGTGCACCATTTAAGGCTAATATATGA 1728 0.331 MSSFKSYGKVNELEQMMLEAKRKTRKRITIIGLSSIIFVGVVIGAVFGVVNNNSKNDHDNNSSQNSVTNSMKAVCDVTLYKDSCYESLGSVVNPGKDIQPEELFKLSINVALTHVSKIIEYFNDHGVFKNLIGNDSRNKEALKNCRDLLDLAIDHLNNSLTTSGENSSLFQVFDDLQTWLSAAGTYQQTCIEGFEDTKQELKKSVVSYLKNSTEYTSNSLAIITWINKVSNTLNLRRLMSLPYENESPKWLNSKDRKLLVTKDLRSKADIVVAKDGSGKYKTISEALKHVPNKSNKRTLIYVKKGIYYENVRVEKTKWNIMIVGDGMTASVVSGRLNVVDGTPTFSSATFAVFGRNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYKCHIDAYQDTLYVHSNRQFYRECNIYGTVDFIFGNSATVIQNCNIMPKLPMHGQQNTITAQGKTDPNMNTGISIQYCNIAPFGNLSTVQTYLGRPWKNYSTTVYIRSRMEGFINPKGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLKNLSIKQANKFSVKDFVQGDRWISASGAPFKANI 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00154 575 CDD PMEI-like_3 73 228 - -
Tsu03g00154 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 226 IPR035513 -
Tsu03g00154 575 PANTHER PECTINESTERASE 5 573 - -
Tsu03g00154 575 Pfam Plant invertase/pectin methylesterase inhibitor 70 222 IPR006501 GO:0004857
Tsu03g00154 575 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Tsu03g00154 575 SMART PMEI_2 66 222 IPR006501 GO:0004857
Tsu03g00154 575 Gene3D - 264 575 IPR012334 -
Tsu03g00154 575 Pfam Pectinesterase 269 561 IPR000070 GO:0030599|GO:0042545
Tsu03g00154 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 62 226 IPR006501 GO:0004857
Tsu03g00154 575 PANTHER PECTINESTERASE 5 573 - -
Tsu03g00154 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 227 IPR035513 -
Tsu03g00154 575 SUPERFAMILY Pectin lyase-like 266 572 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00154 Tsu-Chr3 1285422 1289103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00154 7 575 Carbohydrate Esterase AT3G10710 57.618 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00154 - - gmx:100811152 907.516