LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g00133	ATGAATACATCTGTCAATACGTGTGAGATCGTTGAATTAAGGGAAGAGATATTTCCTGAGTTTGAAACGGATGGAAAACCTGAGAGTAGTTGTTCCTACAAATTAGGAAAAAGGTACTCGATTGAGGATGATATTAACCGTCTTTTCCAAGCTATTGAGATTAAAAGTTCATCAAGAGGTCATAGTATATCGAGGTCGCAAAAGAGTGCTCTTAAAAGACCGATCAAAGTCAGTCCGTCTCAGGCATCGGGAATTGGCATCGCGGAGAATGTAAGTTTGAAACAGGCACTTAGAGGATTGTGCATCTCTCAAGCATCGGAAATGGCTGCTTTGAAGAGACCATCAAAGCAATGCAGCTCATCTAGAGTATCAGAGGTTGGCACGGTAAAAAAGTTGGTTGAAATCTCCCTAGTGCCAGAGATATCTACGCCTTCTGGTAAATTTCCCGATGTAGCAATATCAAGCTCAAGTTCTAACCATTCTATTCCTGTGGTCAAGGCAGCAAGTTCGAAAGAAGTGATAACTAGGTTTGTGTCCCTAGATCAGATCGTTCCTCTTCCACGTGAGGTTGACGCTGGCAACCCAACAATAAGAACCGGGGAAGTGCTAGAGGTCAGAACGAATCCTGCTACCTCGAGTAAATCTTGTCTTGATTCTTCAATGCTGGATAAGGATCGGGTGGAAAATTCACATTGTGCATCTTGTCCGCCTGGCACTCGAAATGATGATGGAGTGGACAAATCCTCGAGCATTAGTACATGTTTGGCAAAGCCAATATTCAATAACATGAACTTTTTTAAGAAAAAGGTAAAGAAAGACCTATGTTCTGCCTCGAGCTGCGCTACTAGTAGTTTTGACAAGGGGAATGGAAATTCTGATCTTAAGCATGAAGTGAAAGAAAATGATAAACAATCTCCATGCAGTTCGAATCATAGCATTGAAGTTAACTCAGTTAATGTTAGTAGAGATTCAAGTAAACCAAGTTCCAGTTTGAATTGCAATAAGAAAACTAAGTTTCTTGTTACAAAAGTTGATGAAAAATCAAGATCAAAGGAAAAGGGTGAGTTCTCGCAGAGCTCAAAAAGTAGCATGGGTGAGTATAGTACTAGTAGCACAAGCATCAGTGAGGAGAGCAATCTTAGCGGTTCAAGTCGCAATGGACAACGACCACACATGTCAAAACACTCGAGATGGGAAGCTATTCGTACGGTTCAACAGCAGCATGGTAACTTAAATTTGAGGCATTTCAGGATGCGAAGGAAGATCGGTAGTGGAGACATTGGAACTGTTTATCTTGCAGAACTAATTGGTACTAGCTGCCTTTTTGCAATGAAAGTTATGGACAACGAATTTTTGGCTAGCAGGAAGAAAACATTTAGGGTCCAAACTGAAAGAGAGATTCTTCAAATGCTGGATCATCCATTTCTTCCTACACTTTATTCGTATATCAATACGGATAAGCTCTCTTGCTTGGTCATGGAGTATTGTCCGGGAGGTGATCTGCACGTGCTGCGACAGAAGCAAACATACAAGAGCTTTTCGGAGCAAGCATCTAGGTTTTATGTTGCTGAAGTTCTTCTCGCCCTTGAGTATTTGCACATGATGGGAGTTGTATATCGAGATCTAAAGCCAGAAAATATCTTAGTACGCGAAGATGGACACATTATGCTGACAGATTTTGACTTGTCACTCAGATGTTCTGTTAATGCTATGTTGGTCAAATCATCTTCACCCGACACAGATGCGACAAAGAAGATCTCCAGTCCTCCTTGTTCAGGGGCTAGCTGCATACATCCTTTTTGTCTCCAACCAGATTGGCAAGTTTCGTGCTTTACTCCTATTCTACTGTCTCCTGGAGCGAAATCTCGGAAGATGAAGGCTGACATAAGTGCTCAAGTTGGTCCACTGCCACAGCTTGTAGTTGAACCTACCGATGCACGGTCTAACTCATTCGTTGGAACCTACGAATATCTTGCTCCAGAGATCATCAAAGGTGAGGGACACGGGAATGCTGTAGATTGGTGGACTTTCGGTATACTTTTGTTTGAGCTTTTATACGGAAAAACTCCCTTCAAAGGTCCATCAAATGATGATACATTATCCAACATCGTGTCGCAAAGCCTCAAGTTTCCAGGTACTCCTATAGTCAGTTTTCATGCAAGAGATTTGATCAGAGGATTGTTGGTAAAGGATCCTGAAAATCGATTAGGTTCAATAAAAGGTGCTGCGGAAATTAAACAGCACCCTTTCTTTGTAGGCCTCAACTGGGCTCTAATACGGTGTGCAGCACCACCTGAGCTCCCTAAGTTTCGCGATTTTGGAACTAGTGCTTCATCTATGGCTACACATAAGGAGAATGCAAATGATTTAGAGGATATAGATGATTGTGAAGAGTTTGAACTGTTTTAG	2409	0.418	MNTSVNTCEIVELREEIFPEFETDGKPESSCSYKLGKRYSIEDDINRLFQAIEIKSSSRGHSISRSQKSALKRPIKVSPSQASGIGIAENVSLKQALRGLCISQASEMAALKRPSKQCSSSRVSEVGTVKKLVEISLVPEISTPSGKFPDVAISSSSSNHSIPVVKAASSKEVITRFVSLDQIVPLPREVDAGNPTIRTGEVLEVRTNPATSSKSCLDSSMLDKDRVENSHCASCPPGTRNDDGVDKSSSISTCLAKPIFNNMNFFKKKVKKDLCSASSCATSSFDKGNGNSDLKHEVKENDKQSPCSSNHSIEVNSVNVSRDSSKPSSSLNCNKKTKFLVTKVDEKSRSKEKGEFSQSSKSSMGEYSTSSTSISEESNLSGSSRNGQRPHMSKHSRWEAIRTVQQQHGNLNLRHFRMRRKIGSGDIGTVYLAELIGTSCLFAMKVMDNEFLASRKKTFRVQTEREILQMLDHPFLPTLYSYINTDKLSCLVMEYCPGGDLHVLRQKQTYKSFSEQASRFYVAEVLLALEYLHMMGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNAMLVKSSSPDTDATKKISSPPCSGASCIHPFCLQPDWQVSCFTPILLSPGAKSRKMKADISAQVGPLPQLVVEPTDARSNSFVGTYEYLAPEIIKGEGHGNAVDWWTFGILLFELLYGKTPFKGPSNDDTLSNIVSQSLKFPGTPIVSFHARDLIRGLLVKDPENRLGSIKGAAEIKQHPFFVGLNWALIRCAAPPELPKFRDFGTSASSMATHKENANDLEDIDDCEEFELF	802

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g00133	802	CDD	STKc_phototropin_like	414	774	-	-
	Tsu03g00133	802	Pfam	Protein kinase domain	418	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00133	802	Pfam	Protein kinase domain	648	751	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00133	802	ProSiteProfiles	Protein kinase domain profile.	416	751	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00133	802	PANTHER	SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1	1	799	-	-
	Tsu03g00133	802	Gene3D	Transferase(Phosphotransferase) domain 1	496	565	-	-
	Tsu03g00133	802	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	537	549	IPR008271	GO:0004672\|GO:0006468
	Tsu03g00133	802	PANTHER	FLIPPASE KINASE 1-RELATED	1	799	-	-
	Tsu03g00133	802	MobiDBLite	consensus disorder prediction	344	396	-	-
	Tsu03g00133	802	MobiDBLite	consensus disorder prediction	290	304	-	-
	Tsu03g00133	802	SUPERFAMILY	Protein kinase-like (PK-like)	389	773	IPR011009	-
	Tsu03g00133	802	MobiDBLite	consensus disorder prediction	280	332	-	-
	Tsu03g00133	802	MobiDBLite	consensus disorder prediction	305	332	-	-
	Tsu03g00133	802	SMART	serkin_6	416	751	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00133	802	MobiDBLite	consensus disorder prediction	357	389	-	-
	Tsu03g00133	802	Gene3D	Phosphorylase Kinase; domain 1	414	495	-	-
	Tsu03g00133	802	Gene3D	Transferase(Phosphotransferase) domain 1	645	769	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g00133	Tsu-Chr3	1139861	1143732	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g00133	296	802	AGC Kinase Gene Family	AT3G52890	61.583	0.0	629

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Tsu03g00133		Pkinase	1.9e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g00133	-		-	gmx:100784955	1197.96