Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00128 ATGTCTATGTTACTAAGAAAAGTGTTGGAAATGTTGTTAAGACGCAATTCagatgaacaacaacaacaacaagttTTGTTTCCTCGTGGTGATTTGGGTGAATTGGATCAATTACCAAGTGATATCttgtttcaaattttaagaCTTTTGGGTCCTAAAGAAGTTGCAAAGCTGAGTTTGATTTGCAAGTCTTTGAAATTCTTTGTATCTGATAATCGTTTATGGCTTCACTTTCTTCAGACTCATCAATCTGATCCATCTTGGGATTCTGTGTTTTTTGCTGAAACTAATTTGACTTCTGGTTACCCTCTTCCATCCCTTGTTGGCCAGAGGCCTCAGTTGTCATTCAAACATATTTATGGCGAAAGAGCACAGGTTCCTGGTGCTATTATCATTGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATATGCTTGTCCATCGGGGAGATCCGCAACATTTTTGGTACGATCCACAACATTTTTGGAATTTGGCAACATTGAGTCGCCAATGTACACTAGACTTCGACATTTTTTCGCGACAATTTATAACAGGATGCAAGTGAAACCAGATAAACAACCGGTTATTGTTTCTATACCAATATGCCATTATGAAGATACTGAATCAGCCAGAGCATCGAGACAACAACTTAAAGAAGCGATTTATGCTTCCCTGTTTGACTTGAATGTTCCTTCTGTTTGTGCCGTCAACCaggCGACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGCTGTTAATATAGGTTTTCAAGTCACATCAGTAGTACCAATTTTTAACGGTAAAGTAATGCGCAAGGTCGGTGTGGAAGTTGTGGGACTGGGAGCACTGAAAGTTACAGGATTTCTTAAGGAGAAGATGCAACAGAACAACCTAAATTTTCAATCATTGTACACTGTACGCGCTTTGAAAGAGAATCTATGCTACGTTGCTCTTGATTATGAAGCTGAGCTAttaaaacaaaacacacaagCATCGTTTCAAGCTGCAGGAGATGGATGGTTTACACTCTCAAAAGAGCGGTTTCAGACAGCAGAGGTTTTATTCAAGCCACATCTTGCTGGAATGGAAGCCATGGGTTTGCACCAGGCCATAGCTCTTTGTATGGAGCATTGCCATTCTGCAGAATTACCAGGCGACAGTGATTGGTACAAGACTGTAGTTTTATCAGGGGGTACTGCATGTTTGCCGGGTTTGGCAGAAAGACTAGAGAAGGAACTCCATGCTTTACTTCCTCCATACATGTCCAATGGAATTAGAGTCATGCCTCCTCCATACGGTGTCGATACTCAATGGTTCGGAGCAAAGATGATTGGCAATTTGAGCACATTTCCTGGTCCTTGGTGTGTGGAAAAAAAGAACTTCCGCCAGAAGCCTAGGCTCAGCCTCATATGGTGA 1428 0.3999 MSMLLRKVLEMLLRRNSDEQQQQQVLFPRGDLGELDQLPSDILFQILRLLGPKEVAKLSLICKSLKFFVSDNRLWLHFLQTHQSDPSWDSVFFAETNLTSGYPLPSLVGQRPQLSFKHIYGERAQVPGAIIIDGGSGYCKFGWSKYACPSGRSATFLVRSTTFLEFGNIESPMYTRLRHFFATIYNRMQVKPDKQPVIVSIPICHYEDTESARASRQQLKEAIYASLFDLNVPSVCAVNQATLALYAAKRTSGIAVNIGFQVTSVVPIFNGKVMRKVGVEVVGLGALKVTGFLKEKMQQNNLNFQSLYTVRALKENLCYVALDYEAELLKQNTQASFQAAGDGWFTLSKERFQTAEVLFKPHLAGMEAMGLHQAIALCMEHCHSAELPGDSDWYKTVVLSGGTACLPGLAERLEKELHALLPPYMSNGIRVMPPPYGVDTQWFGAKMIGNLSTFPGPWCVEKKNFRQKPRLSLIW 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00128 475 SUPERFAMILY F-box domain 26 90 IPR036047 GO:0005515
Tsu03g00128 475 SUPERFAMILY Actin-like ATPase domain 250 459 IPR043129 -
Tsu03g00128 475 Pfam Actin 183 463 IPR004000 -
Tsu03g00128 475 Gene3D - 130 466 - -
Tsu03g00128 475 ProSiteProfiles F-box domain profile. 32 78 IPR001810 GO:0005515
Tsu03g00128 475 PANTHER MACRONUCLEAR ACTIN 83 472 - -
Tsu03g00128 475 CDD NBD_sugar-kinase_HSP70_actin 130 281 - -
Tsu03g00128 475 Gene3D - 22 102 - -
Tsu03g00128 475 SMART actin_3 127 465 IPR004000 -
Tsu03g00128 475 SMART fbox_2 38 78 IPR001810 GO:0005515
Tsu03g00128 475 Pfam F-box domain 35 76 IPR001810 GO:0005515
Tsu03g00128 475 Gene3D Actin; Chain A, domain 4 284 368 - -
Tsu03g00128 475 SUPERFAMILY Actin-like ATPase domain 128 256 IPR043129 -
Tsu03g00128 475 Gene3D - 241 440 - -
Tsu03g00128 475 PANTHER ACTIN 83 472 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00128 Tsu-Chr3 1086722 1091982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00128 183 471 Cytoskeleton Gene Families AT3G12110 32.432 4.10e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00128 K16616 - gmx:100791973 772.696