Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00125 ATGACCGaattcacaaacaaaaacccTTACCCTCCTCCAACTGCTCTCTACTCCGACCTTGTTCATCATCCTAACCTCTTCATGGAAAAGCTTCAATCTTTTCATGATTCATTTGGTACCAAATTaaaGATTCCTACTATAGGGGGAAAGCCACTAGATCTACATCACCTTTTCGTTGAAGTAACATCCCGCGGTGGTATAGAAAAGGTGATTGTAGATCGTAAATGGAAGGAAGTAGTTATGTCCTTCAAGTTCCGAGAGACCATAACAAGCGCATCATTCATGGTGCGCAAGTACTACCTATCGTTGCTGTATCACTTTGAGCAAGCGTATTATCTTTGCAAGCAAGTCCCTCCCTCACCACCTGATGCTTTGAGTGGGAACCTTGCCAATAGCTCCACAACCAATAGAGAGGGTGCTACAATTAATGATTCACCTGTTCAGGTTAATCCAGCACAGACAATTGGTTCTTCAGTGCGTGGAACAGTTGATGGGAAATTTGATGGTGGATATATAGTAACGGTGGAACTGGGTTCTGAACAGCTGAAAGGTGTCCTGTATCATGTTCCTAGTAATGCATCTCAGAGTTTTTATACTGAAGGTACGCCGCCTATTTCAAAGAatagaaagaaatcaagattggcATTAAGTGATCCTCGTCCGAAATCAAACAGGAATGGTTACAATTTCTTTTTTGCTGAGAATTATGCCAGGCTAAAGCCTTCATTTTACGGACAAGAAGGAGCGATTAACAAGAAAATTGGGGTTATGTGGAGAAATCTGACAGACGCAGAAAGACAGGTTTATCAGGAGAAAGGGAAGAGAGATAAAGAAAGATACAGGATTGAAATGTTGAAGTACAAATCCAACGGTTCAACTCCTCAATAG 888 0.3986 MTEFTNKNPYPPPTALYSDLVHHPNLFMEKLQSFHDSFGTKLKIPTIGGKPLDLHHLFVEVTSRGGIEKVIVDRKWKEVVMSFKFRETITSASFMVRKYYLSLLYHFEQAYYLCKQVPPSPPDALSGNLANSSTTNREGATINDSPVQVNPAQTIGSSVRGTVDGKFDGGYIVTVELGSEQLKGVLYHVPSNASQSFYTEGTPPISKNRKKSRLALSDPRPKSNRNGYNFFFAENYARLKPSFYGQEGAINKKIGVMWRNLTDAERQVYQEKGKRDKERYRIEMLKYKSNGSTPQ 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00125 295 MobiDBLite consensus disorder prediction 129 148 - -
Tsu03g00125 295 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 293 - -
Tsu03g00125 295 CDD HMGB-UBF_HMG-box 221 284 - -
Tsu03g00125 295 Gene3D - 19 120 IPR036431 GO:0003677
Tsu03g00125 295 SMART bright_3 22 113 IPR001606 GO:0003677
Tsu03g00125 295 SUPERFAMILY ARID-like 23 118 IPR036431 GO:0003677
Tsu03g00125 295 SMART ARID_2 18 108 - -
Tsu03g00125 295 Pfam ARID/BRIGHT DNA binding domain 26 108 IPR001606 GO:0003677
Tsu03g00125 295 SUPERFAMILY HMG-box 208 291 IPR036910 -
Tsu03g00125 295 Gene3D High mobility group box domain 219 293 IPR036910 -
Tsu03g00125 295 MobiDBLite consensus disorder prediction 197 221 - -
Tsu03g00125 295 CDD ARID_HMGB9-like 24 108 IPR045303 GO:0003677
Tsu03g00125 295 Pfam HMG (high mobility group) box 221 288 IPR009071 -
Tsu03g00125 295 SMART hmgende2 220 289 IPR009071 -
Tsu03g00125 295 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 6 293 - -
Tsu03g00125 295 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 221 288 IPR009071 -
Tsu03g00125 295 ProSiteProfiles ARID domain profile. 21 112 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00125 Tsu-Chr3 1067574 1071880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00125 15 290 ARID Transcription Factor Family AT3G13350 55.088 7.27e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tsu03g00125 ARID 1.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00125 - - mtr:MTR_3g009890 383.259