Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00114 ATGGCTGGGATTGATGAAAATCTTGCACTTAATGGTGATTGGGGTCTTCCTAGTCCAAGTCCAAGGACCCTTTTTTCTAGAATGCTCGAAGAAGAAAACAATGTAATAAGACCAAATTCAGAACATTCTGGAAATGGTAGGACTGAGGCACAAGATGGTGATTCCGGTACACAATTGAGCGACATGAGTTATCCGACCGAGCAAAAGCCGAGCTCACGCGGTGGTCTTGTTGAAAGAATTGCTGCTAGAACCGGATTTAATGCTCCAAGGCTGAATACAGAAAGCATTAGATCTACCGAACGTTCGCTCAATTCTGAGATTCAGTCTCCTTACTTGACTATACCACCTGGTCTTAGTCCTACTACACTTTTAGATTCTCCTGTGTTCCTTGTGAATTCATTGGCACAACCATCTCCAACAACAGGAAAGTTTCCATTTGTTTCAAATGGCAACATCCGCTGCACAGATTTATCATCCGATGTTCAAGAAAAATCTAAGCAGAATGGCTTTAATGATATTTATGCATCGTCCTTTGCTTTCAAGCCTACAACAGATTCGGGGCCCTCTTTTTATCATGGTGCTGGTAGAAATATAAATCCAACTACATTTTCTCAGCAATCCCTTCATGGTATTGAAGCTTCAGTTCAATCTCAAAGAGTTGATCCGGTCAAAGTTCAAACTGAGAACAAAAGTAGCCTCCATTTTAAGGCAGAGTTCTCTAACTCTCCACCTCAAAAAGACAATTCTCCACCAATAGAAGAGCAAGCAGATGAAGAGGGAGAACAAAGAGTCAACGTTGACTCGATGGTTGCTGGTACTCCATCAGAAGACGGATATAATTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGTAGTGAGTACCCTCGAAGTTACTACAAGTGTACTCATACAAATTGCCCGGTTAAAAAGAAAGTCGAACGTTCTCATGAGGGCCATATAACGGAGATAATCTATAAGGGGGCACATACCCACCCGAAACCTCCTCCAAGTCGCCGGGCAGGCATAGGGTCCACTAACTCCCATGCTGACATGCAAGTGGACAATCCTGAACACGGTGAACCACAGGGTGGTGGCGATGGTGATCGCAGCTGGGCTAATTTACAAAAGGGAAATATAGGAGTCGGTAATTGGAAGCATGACAACCTTGAAGCAACATCATCTGTCAACCCCGAGTACGGTAACCAGTCTACCAATCTGCAAACTCAAAATGGTACTGCTAACTTTGATCCAGGAGATGCAGTGGATGTCTCATCTACATTTTCTAACGAAGGGGATGATGATCAAGCTACTAATGGTAGTGTATCGTTAGCTTACGATGCGGAAGGAGATGAATCAGAGTCTAAAAGAAGGAAACTGGAATCATATGCCGAAATGAGTGGAGCTACTAGAGCCATTCGTGAGCCTAGAGTTGTTGTGCAGACTACCAGCGAAGTAGATATCCTTGATGATGGTTATCGGTGGCGTAAATATGGGCAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAATGCAGGGTGCACCGTAAGGAAGCACGTGGAGCGAGCATCACATGACCTTAAATCTGTGATCACTACATACGAGGGAAAGCACAATCATGATGTCCCTGCTGCTCGTTCTAGCAGTCACGTCAATGCGAACGCTTCTAATGCAGCTCAAGGGCAGGTTTCTGGTCTTCTTCAAAACCATGTTCATAGAACTGAACCATCTCAAATTCACAATGGCATTGGAAGGCCTTCATTTGGCTCATTCAACCTACCCGGAAGACAGCAGCTAGGTCACCCGCATGGCTTCTCCTTTGGCATGAATCAACACCTGTCGAACCTTGCAATGTCAGGATTAGGCTCTTCTGCGCAAGCAAAGTTTCCTGTAATGCCTATGAATCCATTCATGGCGCAACAACAACGCCCCACAAATGAAATGGGGTTCATGTTACCAAAGGGAGAACCAAATGTGGATGCTAATCCTGAACGCAGCGGCCTTAACATGCATAATGGTTCGTCATCAATGTATCAAGATATTATGAATCACATGCCGCTTGGACCTcacatgtaa 2091 0.4419 MAGIDENLALNGDWGLPSPSPRTLFSRMLEEENNVIRPNSEHSGNGRTEAQDGDSGTQLSDMSYPTEQKPSSRGGLVERIAARTGFNAPRLNTESIRSTERSLNSEIQSPYLTIPPGLSPTTLLDSPVFLVNSLAQPSPTTGKFPFVSNGNIRCTDLSSDVQEKSKQNGFNDIYASSFAFKPTTDSGPSFYHGAGRNINPTTFSQQSLHGIEASVQSQRVDPVKVQTENKSSLHFKAEFSNSPPQKDNSPPIEEQADEEGEQRVNVDSMVAGTPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHTNCPVKKKVERSHEGHITEIIYKGAHTHPKPPPSRRAGIGSTNSHADMQVDNPEHGEPQGGGDGDRSWANLQKGNIGVGNWKHDNLEATSSVNPEYGNQSTNLQTQNGTANFDPGDAVDVSSTFSNEGDDDQATNGSVSLAYDAEGDESESKRRKLESYAEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANASNAAQGQVSGLLQNHVHRTEPSQIHNGIGRPSFGSFNLPGRQQLGHPHGFSFGMNQHLSNLAMSGLGSSAQAKFPVMPMNPFMAQQQRPTNEMGFMLPKGEPNVDANPERSGLNMHNGSSSMYQDIMNHMPLGPHM 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00114 696 MobiDBLite consensus disorder prediction 38 70 - -
Tsu03g00114 696 MobiDBLite consensus disorder prediction 448 463 - -
Tsu03g00114 696 Pfam WRKY DNA -binding domain 489 545 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00114 696 Pfam WRKY DNA -binding domain 276 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00114 696 ProSiteProfiles WRKY domain profile. 276 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00114 696 MobiDBLite consensus disorder prediction 1 75 - -
Tsu03g00114 696 SUPERFAMILY WRKY DNA-binding domain 480 548 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g00114 696 Gene3D WRKY domain 475 541 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g00114 696 SMART WRKY_cls 488 547 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00114 696 SMART WRKY_cls 275 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00114 696 MobiDBLite consensus disorder prediction 324 420 - -
Tsu03g00114 696 MobiDBLite consensus disorder prediction 446 465 - -
Tsu03g00114 696 MobiDBLite consensus disorder prediction 216 265 - -
Tsu03g00114 696 ProSiteProfiles WRKY domain profile. 483 548 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00114 696 Gene3D WRKY domain 260 335 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g00114 696 SUPERFAMILY WRKY DNA-binding domain 270 334 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g00114 696 PANTHER WRKY TRANSCRIPTION FACTOR 2-RELATED 87 620 - -
Tsu03g00114 696 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 620 IPR044810 GO:0003700
Tsu03g00114 696 MobiDBLite consensus disorder prediction 387 420 - -
Tsu03g00114 696 MobiDBLite consensus disorder prediction 216 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00114 Tsu-Chr3 945805 951304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00114 1 691 WRKY Transcription Factor Family AT5G56270 49.656 6.71e-176 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu03g00114 WRKY 3.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00114 K18835 - gmx:100127395 1055.82